RNA id: AMCG00000424


Basic Information

Item Value
RNA id AMCG00000424
length 1881
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00000424
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14224164 ~ 14228809 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGACTTAAAAcatcagtacaaaataattgGCTTAATTCTACTGCTTGccttttctgtgtatttgtatataaagcTTAACTTGAACGTTAAGGGTGAACCAATCCTTCACTACAAATAATACActataaagttttaaaatatatatctatatgtgtacatatttgtttagtATATTAACTTAATTTCAACACAATTGCGTTTGATGATGTACATGACATTTGTAAAACACGTTTTCAAAAAGAAGCGGGCAGGACGGAGGCGTTTGTCCCAATTGAGACGCCGTAGAAGGGAAATATTTGACACACATTTTGTGTATAAACAGAACGGAGGACGAACATACTTAAGAGAAATTCAAACTTAAGGAAACTAAGGAAAGATTAATGCGAGAGCCGGAGAACAGGACATGTAGggtTGGTTTTCTATGTAGTAATGGAAACAAGGAGATGAAATGAATGAGCAGACAGCCACGACCAGCCACACATGACCATATTAAAAGGAGTCTACATTGGTATTTCAGATCTCCCAGGCTGAATCCATGCTCTCTGATGAACTGGACTCCAAACCTGAGTTGCTGGTCGAGTTTGTGCAGAACGCCTCAATCCCTTTGGGGCAGGGGCTGGAGGAGCCTGATCCCAAAGAGACCTGTCTCCCTCTGCTTCCGTCCACAGAGAGCTCTTTATGTAGCCAGCTGCATTTAACAGGTGAAGACACTAGTCTCAGCCACGCGGCTTCTGCCTCCCTGTCCGAGTATGAGAACGAGAGGGAGTCCCTGGTGGTGCAGCTGCAGCCGCACCGACCTGTCGCTCTCTCCCCGGCTGCCAGCCCTCCTCCAGTGCTGCATGACCTGCAACACTCAGACAGCACCTCCTTCATACTCCTCAATCTAGCCAAAGGGTTGGCAGCCTCTGCAGAGCCCTTGGTGTTTGTCCAGGATGATGCGGATCATGACATCTCCACCAGTGAGAGCGCAGACGGCACCACCCCTTGGTACCTTCGGGTCCAGGAGCTGGCACACGACAGTCTGATCGCCGCTACCAGGGCCCAGTTGGCCAAGGATGCAAAGGCCAGCAACAGTGTTGATCACCTCCATAGCTACCAACCGGAGGGACCCAAGAGAGAGACGTCCCCCTCAACCGAGCGCCCACACGGtgaaaaaacactgaagtgcACCTTTGAAGGCTGTCGACGGACCTTCACCTGGCCGGCTCACCTGAAATACCACTTGAAAACCCACAAGAATGACCGCACTTTCAGGTGCTGTGCAGAGGGCTGTGGGAAGAGCTTCTATGTGCTGCAGAGGCTGCAGGTTCACATGAGGACACATAACGGAGAGAAACCCTTTGTCTGCAACGAGAAGGACTGTGGCAAGAAATTCACAACCGCCGGAAACTTGAAGAACCACAAGAGAACGCATACTGGGGAGAAGCCCTTTGTGTGTGAAGCTGAAGGCTGCGAGCGCTCTTTCGCAGAGTACTCCAGTCTGCGGAAACACATGCTCGTCCACTCAGGAGAAAAGCCCCATCAGTGCAGCATCTGCGGGAAAACCTTCTCTCAGAGCGGCAGCAGGAACGTGCACATGAGGAAACGGCACAGCAACCCGGGACAGAGCAGCCAGGGCAGAGAAGGGAACACGGGGGAGACGTTGACCCACAGCAGTTTGCTGGAGGACCAGGGCCTTGCCAGTGACAGCATGGTTCCTATGACGGCCTCACGCACACTAGAAGTGGAGCCCATGGATCTGCACCACGCCATGCTCCGAGCACAAGGAGAAAACATCTCCCCTGCATCTGTGGTGGTCCTGTCCCAACCACATGACCTAGTAGCCATGGCCACAGGAGGACATGCCTACGGGGAGGAAGTCGTGGCTTTGCTGCAGTGA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188905 lncRNA upstream 478048 13739776 ~ 13746116 (+) True G150106
TU188855 lncRNA upstream 574113 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 811100 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 1256022 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 1382491 12833539 ~ 12841673 (+) True G149869
TU189157 lncRNA downstream 236083 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 504423 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 702969 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 702969 14931778 ~ 14944400 (+) False AMCG00000443
TU189346 lncRNA downstream 895901 15124710 ~ 15125951 (+) True G150455
AMCG00000422 mRNA upstream 19377 14180836 ~ 14204787 (+) True AMCG00000422
AMCG00000411 mRNA upstream 65074 14157036 ~ 14159090 (+) True AMCG00000411
AMCG00000412 mRNA upstream 72992 14149886 ~ 14151172 (+) False AMCG00000412
AMCG00000410 mRNA upstream 120267 14096501 ~ 14103897 (+) True AMCG00000410
AMCG00000406 mRNA upstream 177394 14037644 ~ 14046770 (+) True AMCG00000406
AMCG00000423 mRNA downstream 6431 14235240 ~ 14245576 (+) True AMCG00000423
AMCG00000421 mRNA downstream 32600 14261409 ~ 14282672 (+) True AMCG00000421
AMCG00000417 mRNA downstream 57207 14286016 ~ 14288319 (+) True AMCG00000417
AMCG00000416 mRNA downstream 87352 14316161 ~ 14340047 (+) True AMCG00000416
AMCG00000420 mRNA downstream 112691 14341500 ~ 14342163 (+) True AMCG00000420
TU189044 other upstream 70324 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 531575 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 1496261 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 2238449 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3689027 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 2707184 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3316645 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 3925055 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4188371 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 4313568 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile