RNA id: AMCG00000471


Basic Information

Item Value
RNA id AMCG00000471
length 4019
RNA type mRNA
GC content 0.43
exon number 13
gene id AMCG00000471
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15650291 ~ 15669353 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttcttttttctttttggtgcCTTTTGCATTCCCTCGCTTCTCTCCGCCCGTGCGCCTGTTGGAGCGGCTGGCTACGTCACAGTGAAAACTAACTTGGCGATCACAATGTTGCACAGTTAACAGCCATCCTCTCTAGCAGGGAAGCGCTGGAGCGACGGGTCTGATCGCAGATTAAAGTCCTTCCTTTTCGCCCATGGCTCCCTGTCAGCACTAGAGCTGGTTTTAAGAGATtgccaaacaaacaacaacagcgagagggagagagagagagagagagagagagagagagagagagagagaaaagccaGACGGAAGTGGACCGATTTCACACGAGGTGTATCCTGCAACTTTTCCAAGGGCTTTATCTGGGTCCCAATGGCAGGACACGAATGGGACGACTGGTTTGAACGGGAGGAGTTAATCGGACAGATCAGCGACATCAGAGTGCAGAATCTGCAAGTACTGGGCTGGTTGGACAGAACTGAGACTTCAAAGGAAGACTTCCGTAAATGTAAACCTCCCTTGGAAgtgaacaatttatttaaagacattcAAGATGGCCGAATCTTGATGGCTCTTTTGGAGGAACTCTCGGGCTATAAATTGCTGCATGGCTTCAAACCATCTTCGCATCGAATATTTAGGCTAAACAATATAGCTAAGGTCTTGAACTTCTTGGAGGAAAGAAATGTGAAGCTGGTCAGCATTGATGCTGCCGATATTGCAGATGGGAATTCCTCCATTGTCCTTGGACTGATATGGAACATAATTCTCTTCTTTCAGATAAAAGAACTGACAGGGAACATCAAGAGCAGGTTTCCATCCTCCTCCAGTCTTTCTTCACTGCACAACAGCACTGACTCAGATACGTCCCACCCCAGCACTCCCTGTGAGGAGAAGCGTGTGTTTGTGTCGCACAAGGATCATGGCAGGGCCATAAAAACACTACTGCACTGGGTGCAGAGACGAACAAGAAAGTATGGTGTggcagttcaagactttggaaaAAGCTGGACAAGTGGCCTGGCATTCCTCGCAGTAATTAAAGCCATTGACCCCGGCTTGGTGGATATGAAGAAGGCCCTAGAGAAACCTCCAAGGGAAAACCTAGAAGATGCTTTCAGAATAGCACATTACAGCCTGGGCATACCCAGACTCCTGGAACCAGAGGATGTTACCATTAATTCACCGGATGAACAGTCAATTATGACATATGTATCTCAGTTTCTTGAACACTTTCCAGAGCTAGAGGATGAGGAGATCTCTGAGGTGGTGGAAAAATCTCTTTCTGAAGTGAGACAGAATTCTTTGCTAAATGAAGAGTCTGATCACAATGCCCATAAGAATGGGGATCGCCCATATGTTGTAAGAAATGATTGGATACAACCGCCTCCAAAGATATTTATTTCCTCTGTATCAGATGATTTGGAACAAGTGTCTCCCGTAAATGAGATGCTGAGTGATGGACATGGTCAACCTTGGAATAGCGAAGAAGATTCCTCAGAGTCCACCTCCAGCTATGTAGAGTCCCCTGGCTGTAGAAACCTACCTTTAGAACTGGGGAAGGAAGTGTCTTTCACAGTGTCCAGTTCAAGTTCTCCCCAGCCTTCCTTTGTGGACTCGGTGATTGACTCACCAGACTCTTGGAGCGAGGTTCTGGGTGAAGCTGTGCATCCAGAAAGCTTGGGCGAGTTGCACAAGAGCAGAAGTGACAGCTCTCTCAATGAAAGCGAACTGTCACTCGATCATACGGGGCAGGGGACCACGGGGGTAGAGTGGATGAAAACCATAGAAAATGTTCAGGACTCTGGTACAGAATCCGCACTTGAAGGAAATGCCACAGAAGACACCGTTTTTTCTGAGCTTTTCATAGATGAAGGGGCTTTCTCGCAAACGTCTATGGATGGCTTTCACACAAAGTCTAAGCTGCCTTCGGAGGAAGAAGATGCATACAGATATATTTTGGACCTGAAGGATGATGAAAATGCAGAGCAGGATGgttctgaacaaaataaaatgagtttGCCACAAAATGCCTGTGGAGAAACGGACCACCCATCTACTGATGTGTCCCGAGCTTCTGTCTGCAACAGTGCCCCTCCAACAGAGGTTGGTGAAGAAGGCTATCGAGAAGCAAAGAAACGAGATGGTCACACCTTCCCTGATGAGGAACTTTGCAATAGTGAACCCTGTGAAATGAATGGCAGTGTTGCAGATTCTGCTATACCTCAGGATATAGTTTACTACTCTCACTATGTGACCATATCAGATGTTGATGAATCAATGTCAGAGCCTCCCAATGACTTACCATGTGATGAAAAGTCTGATCTTAAGGAAAATACAGAGGAATACCTTGGAAATCATGTGGACACATTACAAGTGGATGCTTCCACTGATGAAAACCACTTGAACAAAGACAATCAGGGAGCCGATCGTGATTCCAGTCAATCTGAACAAGAACGTCTGTCGGGAGACTTTAATAACTCTGAAAAACAAACGGACCAAATACTATCATCCGAAGCTGACGCACTCCTACAAAACAATGAAGACTTCAGACTGTATAAGACTGCAGAGGAACAGATCCCAGATACAATGCCAGGAGCCACAGAATCTGATTTCAGCGAACAGCATGAGGACTTTCGGGACCTGGGAGATGTCAACTCTGATAACTGTGAATGTATTAGTCCTACAGAAGAATCCAGTGCCAGAAAACACGGAGAGATCCCAAGGAATTCAATACCATGCGAGTCAGCCAGGGAGAGTCACCTTCCTCACGTTTTATACCTTAGGAAACTTAATGATACAGATGACTTAAAGaataAAAGCAGCGAGACCAAAGAAGGCGGGAATGAAAGGAATCAGACTATCAGCTGTGTTACCAGGAGTGGATACAGAGGGCCAGAGAGTTCAGTGACCTCCTTTGAGGACTCGAGCCAAGCCACAGCTGAGGAGATCCACCTGCTTTTCTTCCTGTGGATCCTCCTCTACTGCCTCTTCCTCCTTCCGCAACTCGACCTCCAGACTCTGCCACAGTTTTTCTTCAACTAAGAAATGAAACCAAGGCTTAAGGCGTTAGATGCACTATGGTACTTAAATCTGCTTCAAAATCGATGTTTACGGACAAGGGGAGGCTTAGAACAAAACCTGCAAATATGAATCCAGGTGGGCCATTCAGTTCGTACAATGTCCATTTTGGAGTTCATTAATAATtcacatgtgttttgttttgtatgctttTGAATACTGATTTTTAGCTTCCTCTGTGGTTCGAAAGCATTTGAAAAGTAGAATGTatacatgtctttttttttttttacttggttACTTTTACTCTGGATTTGTATATAGACAACTTAAATATGATTACAATTTAGTTTCATGTTAGAGGCAAGTGACCTTTATTGCTTTCTCTTTGTGCAACATGGAGTTATTCTAGTTTGTAATGCTTAAGCAATTTCCGTTTATAAATCATTCTTATTGTTTACCTAAGAGCCAGTAATTTAATATAAGAAGGACAATgaacttttctttgtttttttaaccttttatgtTTCTCCTTAACCACTGTCTAAATGCTCTGGTTATTTTACAAAGAAATAACTAGCTTTGAAATTGAGCACACCTTAAAGGTACAATATGTTGTATGAGATACAGAAGGTAgtatattaaaaagacaaagcacATTTAATTGGCTTTGGTCTTTGAATTCTCCACTACTCTCATTGACTGCTTGAAGATAATGCTTATTTATGTAAACTGCACTTTTGATGGACATAAACTGCCAAAGAAACAGTATTTTGAGCGGTGAAAGGCTGGGCCTTCTGGTTTGCTTTAGTCACAAAATGAATATAAGCTTGGTTTGTTTATTCccacatatatattacaattaggAGAACTTATTCAGGTGTGACAGTATCTAGTAaacttatatttgtatattttgaaaaaactgaaatagagAATGAAGCTTTTTGAAGCTGATGGATCTTAAAATATGAAGAATGGATTTCTGaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189489 lncRNA upstream 31265 15615130 ~ 15619026 (+) False G150563
TU189487 lncRNA upstream 31265 15617015 ~ 15619026 (+) True G150563
TU189412 lncRNA upstream 350413 15295607 ~ 15299878 (+) True G150506
TU189381 lncRNA upstream 399562 15250517 ~ 15250729 (+) True G150484
TU189372 lncRNA upstream 421029 15228957 ~ 15229262 (+) True G150475
TU189578 lncRNA downstream 521467 16190820 ~ 16191021 (+) True G150642
TU189631 lncRNA downstream 975775 16645128 ~ 16646915 (+) True G150686
TU189636 lncRNA downstream 978552 16647905 ~ 16649574 (+) True G150687
TU189633 lncRNA downstream 978712 16648065 ~ 16649574 (+) False G150687
TU189639 lncRNA downstream 1012562 16681915 ~ 16722627 (+) True G150689
AMCG00000470 mRNA upstream 8994 15620646 ~ 15641297 (+) True AMCG00000470
AMCG00000478 mRNA upstream 208004 15426545 ~ 15442287 (+) True AMCG00000478
AMCG00000474 mRNA upstream 266290 15352977 ~ 15384001 (+) True AMCG00000474
AMCG00000473 mRNA upstream 355822 15292315 ~ 15294469 (+) True AMCG00000473
AMCG00000462 mRNA upstream 368829 15278456 ~ 15281462 (+) True AMCG00000462
AMCG00000484 mRNA downstream 9349 15678702 ~ 15694287 (+) True AMCG00000484
AMCG00000485 mRNA downstream 65443 15734796 ~ 15736604 (+) True AMCG00000485
AMCG00000489 mRNA downstream 83072 15752425 ~ 15758447 (+) True AMCG00000489
AMCG00000483 mRNA downstream 354530 16023883 ~ 16029161 (+) True AMCG00000483
AMCG00000491 mRNA downstream 528928 16198281 ~ 16208276 (+) True AMCG00000491
TU189044 other upstream 1496451 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 1957702 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 2922388 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 3664576 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 5115154 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 1266640 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 1876101 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 2484511 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 2747827 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 2873024 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile