RNA id: AMCG00000489


Basic Information

Item Value
RNA id AMCG00000489
length 2272
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00000489
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15752425 ~ 15758447 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAAATTGATCTAGCCCGGGGAGGGTTTATATTAGCAATGAAGCCCAGAAGCCTTGCAAAGGTCATCAAAATGTAATACTGATGTGGCAGCTATTACTATTTCTCTGaataaaaaatgatacaaaTTATGTATAGTTCAGcatagaacattttaaaggttCACATGAGATTCGTGAGTTTTCCAGTGACATGCCAAAGCACGGATGATCATTTAAGCAAATAGTGGTGCATGTCAGTCGATTTCAGAGACGGTCAGAGGTTAGCATCGAGTTAATGTTTACAAAAGAGGGCGGTTTCAGCTGCAGAGGagtataaatgtacataaagCCAGCCACAAAGTCTGCATGAGGGAAGAACTCTAGTTgGTGAAAATGGGAACTTTTCTGAAGGTGTACTTAATTGCCACACTGCTGTGTTGTGCAGTATGGGGCgaccatcatcatcatgatgATGAGCATCACTCTGGCTCCAAAGATCATAGCCATGTACATCACAAAAACGAGGGGCACCCCCATCACGAGGAAGGAGAAATGCCGTGCCACACGATATCCCCTGCCAACGCTGACTTTGCCTTCTCTTTGTACAACCAGTTGAAATCACGGCCTGACGCAGAACCCAAAAACATCTTCTTTTCTCCCTTGAGCATCTCCACTGCCCTCGCCATGTTGTCGCTGGGTGCAAAGGGTGAAACGCATGCCCAGATCTTTCAGGCCCTGGGCTTCGGTAACATGACGGAGAAGGAGGTCAAAGAGGGCTTTGAGCATCTGCTGCACATGTTGAAACACAACCAGAAGGAGATGCAGCTGGAGGCGGGGAACGCAATCGTCTTGAGCGACGGGTTCAAAGCCTCTCACCAGTTCCTGGCAGATGCAAAGCACTACTTCGAAAGCGAGGGTTTCTCCGTTGACTTTCACAATCCTGAAGTAGCCAAGAAAAGAATTAACGACTTTATTGCAAGGAAGACCCACAACAAAATTACAGATCTTGTTCAGGATTTGGATCCTAGTACCCTGATGGTTCTTTTAAACTACATGTTCTTTAGAGGCAAATGGGAAAAGCCTTTTGATTCCAAACTGACCCAAAAGAGTGACTTCCACGTGAACGAGAATAAGACCGTGTCTGTTGATATGATGAAGAGAACCGGCCGCTACGGCTTCTATTATGACTACCAGAATTTTACTTCAGTACTGAAGCTTCCTTACAAGGGCAGTGCATTGATGATGATTATCTTGCCCGATGAAGGCAAAatggaggaggtggagggctTCATATGTAAGGAACACATCAGGAGATGGCATGATTCACTGTATAGAAGCTCTGTGGATCTGTATTTGCCCAAATTCTCTGCTTCTGCAACCTACTCTCTGAAGGAGATCCTCACAGAGATGGGGATTGTCCATGCCTTCGATAACACCGCAGATTTCTCTGGGATTTCGGAAGAGGTTAAGCTGAAGGTGTCCAAGgcGACTCATAAAGCAGTTCTTAATGTGGATGAGAAGGGCACAGAGGCGGCAGCTGCTGTCCATATGGATTTGATGCCCATGTCTCTACCTCAGACAATGGCTTTAAATAGACCTTTCATCTTGCTTATCCTTGAGAAAACTACCAAGAGTATACTCTTTATGGGCAAAATAACAGATCCTACAGCACAGTAAAGTGGTTCACTTCAAGAAGGTATAAAGGCGACTTTGCACGCAGCACGTTATATAAAGGTCAAGATCAGATTAACCTGTGAAGACAACCTTTACGttgtacttttatttcaaacccctttattaatttccctttaaattaaaaataaaatgaaactatgcatcatttgtttgtgttactgttatctgtgtgttttgaagGGTAGGAAAGGTAAAAGTCAAGTCTGGTCATGAGTCAAAGATTTCAATACACAAGTATTTATCAGAAATGCATGGCGTGTTTGTGAATTGACTGCTGaaataaagtgcaataatactcCAAAATGTGGGCCTGTTGAATCTATTCACATAACTCAATGTGatgcaatgtttatttgtacataATCATGTGCATCCCCATGAAATGATCTTACTACTAtttacagagagaaaaatacatgaagATAAAAGCTCTTTTAAAAGTGAgtgataaaaaatgaaagtgtataaaaaaacacattaaacattgAAACACTGCACTGAAACTATTATTACTGAACAAGTCTAATCTATCCCTGCAGGATATGTTTTTGTGAATTCCATATATGTATTAGATAAATCAGTGTTTCTCTGCTGCCTG

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K03984 SERPINA1, AAT; alpha-1-antitrypsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189489 lncRNA upstream 133399 15615130 ~ 15619026 (+) False G150563
TU189487 lncRNA upstream 133399 15617015 ~ 15619026 (+) True G150563
TU189412 lncRNA upstream 452547 15295607 ~ 15299878 (+) True G150506
TU189381 lncRNA upstream 501696 15250517 ~ 15250729 (+) True G150484
TU189372 lncRNA upstream 523163 15228957 ~ 15229262 (+) True G150475
TU189578 lncRNA downstream 432373 16190820 ~ 16191021 (+) True G150642
TU189631 lncRNA downstream 886681 16645128 ~ 16646915 (+) True G150686
TU189636 lncRNA downstream 889458 16647905 ~ 16649574 (+) True G150687
TU189633 lncRNA downstream 889618 16648065 ~ 16649574 (+) False G150687
TU189639 lncRNA downstream 923468 16681915 ~ 16722627 (+) True G150689
AMCG00000485 mRNA upstream 15821 15734796 ~ 15736604 (+) True AMCG00000485
AMCG00000484 mRNA upstream 58138 15678702 ~ 15694287 (+) True AMCG00000484
AMCG00000471 mRNA upstream 83072 15650291 ~ 15669353 (+) True AMCG00000471
AMCG00000470 mRNA upstream 111128 15620646 ~ 15641297 (+) True AMCG00000470
AMCG00000478 mRNA upstream 310138 15426545 ~ 15442287 (+) True AMCG00000478
AMCG00000483 mRNA downstream 265436 16023883 ~ 16029161 (+) True AMCG00000483
AMCG00000491 mRNA downstream 439834 16198281 ~ 16208276 (+) True AMCG00000491
AMCG00000492 mRNA downstream 450258 16208705 ~ 16215471 (+) True AMCG00000492
AMCG00000490 mRNA downstream 457835 16216282 ~ 16232431 (+) True AMCG00000490
AMCG00000486 mRNA downstream 522459 16280906 ~ 16291497 (+) True AMCG00000486
TU189044 other upstream 1598585 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 2059836 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 3024522 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 3766710 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 5217288 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 1177546 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 1787007 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 2395417 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 2658733 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 2783930 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile