RNA id: AMCG00000491


Basic Information

Item Value
RNA id AMCG00000491
length 2689
RNA type mRNA
GC content 0.39
exon number 17
gene id AMCG00000491
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16198281 ~ 16208276 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAATACTACCGCATCACATGACgCCACTTCTCGACTTCTGGTAAACTATCCAGAGCCTTACCGTAGTCAGATCTTGGATTACTTGTTTAAGCCAAACTTCGGCGCCtctttacacattttgaaagttgAAATTGGGGGTGATGCACAAACAACAGATGGAACCGAATCCTCTCACATGCACTACAAAGATGATGAGAACTACTTCCGGGGTTATGAGTGGTGGTTAATGAAGGaagcaaagaaaagaaacccaaaCATAACTCTAATAGGATTGCCTTGGGCTTTTCCTGGATGGGTTGGGTCTGGAAAGAACTGGCCATATGACTTTCCTGATATAACAGCTTATTATGTTGTATCCTGGATTATTGGAGCCAAACAGTACCATGACTTGGACATTAATTATGTAGGGATTTGGAATGAAAGGAAATTTGACACCAAATACATAAAGCTCCTGCGATACACACTGGATAAGAGTGGTTTGAAAGGAGTTAAGATCATAGCCAGTGATAACCTCTGGGAACCAATAACAATGTGCATGCTTATTGATCAAGAACTTCACGATGCAATTGATGTAATAGGGGCCCATTATCCAGGGACTCTTACAGTATCTGAAGCACTGATGTCAGATAAGCAGCTGTGGTCCTCGGAGGATTACAGCACTTTCAATGATGACGTTGGAGGAGGATGCTGGGCCCGTATTCTCAATCAGAACTATGTCAACGGACGGATGACTGCCACCATATCCTGGAACTTGATTGCCAGTTATTATGAGGAACTTCCATTTGGACGAGATGGTTTAATGACTGCCGAGGAACCATGGAGTGGGAACTATGTTGTGGAGTCCCCTATATGGATAACAGCCCACACAACCCAGTTCACCCAGCCAGGATGGACCTACCTGCAGACTGTTGGGCATCTGTTGAACGGTGGAAGTTATGTTGCCCTAACAGATGGGTTAGGAAATCTCACAATTGTCATAGAAACAATGACACATGATCATTCGGTTTGTATAAGGCCTCCACTCCCTGCCTTCAATGTTTCTGCACAAAATGCAACTTTCAATCTGAAAGGATCTTTTAGCTCTCTCGAAATGCTTCAAGTATGGTATTCCAGATTTGACTTCAAAACGAATAAGTCTAAATTCTTCCAGAAGCTCGAACCAATCAAGCTTTCTCGTGGATCATTTACCTTGAACCTGAATGTGGATGAGGTTTACACTTTAACCACATTAAAAACAGGCAACAAGGGCACCTACCCTAAGCCACCTGACTCGGCTCCGTTCCCTAAGCAGTACAAGGATAATTTCAACGTTCGTAACCCTGCTTTCACTGAAGCCCCAGATTTTGCTGACCAGACCGGAGTGTTTGAATACTTCATAAACATGACTGATCCAGGAGACCATGTGTTTACCTTGAGACAAGTAGTCACTCAGAGGCCTGTAACTTGGGCTACTGATGCTGACCAGACAATTAGCATCATTGGAGACCATGCATGGCAGAACATATCCTTGACTTGTGACATATACATTGAAACGCCCGAAACAGGGGGAGTGTTTGTAGGTGGAAGagtcaataaaggaggaggGTCTGTACGAGATGCAAAAGGCATTTTCTTCTGGGTGTTTGCAGACGGTACTTACAGGGTCACCAATGACATCTCTGGAAACATTGTGATGGCCAAAGGCTTATCAGGAACAAGAGCAGGTGTTTGGCATACATTAACCCTAAATATCGAGGGTGATTTTGCCTCCGGACTGCTGAATGGATACCCGCTGTGGAAGAATGCAACTATTCTTGGGCCCAGTAACGGCTGGGCAGCTATAGGGACGAGCACTTTTGAATTCGCGCAATTTGATAATTTTTACGTGAATGCAAACTAATTAgtaatttttatacatttacaacataaaatatgAGAAGTGACCTTGAGCTCACATTGTGATGTCAATCTCTGTCAATTGCGCACATACCACTTATTTTCCTGTCATTACCCTGTGAttgaatttgacattttattggacattgatttttaaatattttttcaattaccatgtttaaaattaaaacaagttttatCAAGTTTCAGTTCTTCTGAAAAGAGATTAGGTTTCTCAGACCCAGTGCctttaaacttaatttaaatgtgatctacagtgtgaaaaatatttaataacatactttTATCCATCAGTTTCCGCTTTATAAAAATGTTCGACATTTTACTCGGAAAAACATAATGTTCACAACTTAACATGATAACAGAGAATATGCTTTAATATGTACtatgtacactttttttttaataaccttaTCTGACACACTTCTGTGAAATGTCTCACCATCTAAACTGTTTTTTATacggagaaaaaaaaagggaatattAACACTTGCAAATAGGTACTGTTTCAATTCCATCTTTtatgcagttatttattatattgttttaatatatatgtattgacTCGTTCTATAGAAAATGCTGGACATGCAATGCTGCCACtagatttaaaatgcactggGTTTCAGAGCTTACCAACAATGGGTGGACGGTTTAATGTATGGTGAATGTTAATACGATAAAACAAAATTTAATGATCTGTGTATCGTGCCTTTTGTTCTACCTTGGTTATATAAGGAATGTCATTTgcactgtttaatttgattaaaatgtattattaaaataaa

Function

GO:

id name namespace
GO:0006683 galactosylceramide catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0004336 galactosylceramidase activity molecular_function

KEGG:

id description
K01202 GALC; galactosylceramidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189578 lncRNA upstream 7260 16190820 ~ 16191021 (+) True G150642
TU189489 lncRNA upstream 579255 15615130 ~ 15619026 (+) False G150563
TU189487 lncRNA upstream 579255 15617015 ~ 15619026 (+) True G150563
TU189412 lncRNA upstream 898403 15295607 ~ 15299878 (+) True G150506
TU189381 lncRNA upstream 947552 15250517 ~ 15250729 (+) True G150484
TU189631 lncRNA downstream 436852 16645128 ~ 16646915 (+) True G150686
TU189636 lncRNA downstream 439629 16647905 ~ 16649574 (+) True G150687
TU189633 lncRNA downstream 439789 16648065 ~ 16649574 (+) False G150687
TU189639 lncRNA downstream 473639 16681915 ~ 16722627 (+) True G150689
TU189674 lncRNA downstream 603177 16811453 ~ 16811983 (+) False AMCG00000514
AMCG00000483 mRNA upstream 169120 16023883 ~ 16029161 (+) True AMCG00000483
AMCG00000489 mRNA upstream 439834 15752425 ~ 15758447 (+) True AMCG00000489
AMCG00000485 mRNA upstream 461677 15734796 ~ 15736604 (+) True AMCG00000485
AMCG00000484 mRNA upstream 503994 15678702 ~ 15694287 (+) True AMCG00000484
AMCG00000471 mRNA upstream 528928 15650291 ~ 15669353 (+) True AMCG00000471
AMCG00000492 mRNA downstream 429 16208705 ~ 16215471 (+) True AMCG00000492
AMCG00000490 mRNA downstream 8006 16216282 ~ 16232431 (+) True AMCG00000490
AMCG00000486 mRNA downstream 72630 16280906 ~ 16291497 (+) True AMCG00000486
AMCG00000495 mRNA downstream 532408 16740684 ~ 16745744 (+) True AMCG00000495
AMCG00000512 mRNA downstream 587817 16796093 ~ 16801794 (+) True AMCG00000512
TU189044 other upstream 2044441 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 2505692 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 3470378 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 4212566 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 5663144 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 727717 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 1337178 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 1945588 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 2208904 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 2334101 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile