RNA id: AMCG00000505


Basic Information

Item Value
RNA id AMCG00000505
length 282
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00000505
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17340772 ~ 17355823 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTAActgGAACAACGTATATCTTTGGCAAAGGTGGAGGACTCATAACATACACTTGGCCATCGAACGACAGGCCCAGCACACGCACAGACCGCCTGGCCGTCGGTTTCAGCACGTCCCTGAAGGATGGGATCCTCGTGCGCATTGACAGCGCTCCAGGTCTCGGGGATTTCCTGCAGCTTCACATCAATGGTTCAGATAACTGGCCCAAGGGCTCCTCCATGGCTCTGACTGGAGACAGAGATGTTGTAATGCAATCCCCCCCAAGAACACTCTGctga

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189674 lncRNA upstream 528789 16811453 ~ 16811983 (+) False AMCG00000514
TU189639 lncRNA upstream 618145 16681915 ~ 16722627 (+) True G150689
TU189636 lncRNA upstream 691198 16647905 ~ 16649574 (+) True G150687
TU189633 lncRNA upstream 691198 16648065 ~ 16649574 (+) False G150687
TU189631 lncRNA upstream 693857 16645128 ~ 16646915 (+) True G150686
TU189793 lncRNA downstream 192387 17548210 ~ 17548508 (+) False G150811
TU189824 lncRNA downstream 299753 17655576 ~ 17702341 (+) True G150831
TU189855 lncRNA downstream 402690 17758513 ~ 17759502 (+) False AMCG00000525
TU189893 lncRNA downstream 513475 17869298 ~ 17870290 (+) True G150877
TU189913 lncRNA downstream 594111 17949934 ~ 17968712 (+) False G150886
AMCG00000509 mRNA upstream 87147 17211968 ~ 17253625 (+) True AMCG00000509
AMCG00000508 mRNA upstream 146656 17191781 ~ 17194116 (+) True AMCG00000508
AMCG00000504 mRNA upstream 157692 17170250 ~ 17183080 (+) True AMCG00000504
AMCG00000503 mRNA upstream 234170 17104080 ~ 17106602 (+) True AMCG00000503
AMCG00000498 mRNA upstream 288938 17006469 ~ 17051834 (+) True AMCG00000498
AMCG00000507 mRNA downstream 21559 17377382 ~ 17400347 (+) True AMCG00000507
AMCG00000506 mRNA downstream 71699 17427522 ~ 17430497 (+) True AMCG00000506
AMCG00000530 mRNA downstream 173894 17529717 ~ 17539409 (+) True AMCG00000530
AMCG00000526 mRNA downstream 363826 17719649 ~ 17748022 (+) True AMCG00000526
AMCG00000525 mRNA downstream 392687 17748510 ~ 17759582 (+) True AMCG00000525
TU189714 other upstream 402490 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 3186932 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 3648183 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 4612869 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 5355057 11982460 ~ 11985715 (+) False AMCG00000352
TU189794 other downstream 189631 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 798041 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 1061357 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 1186554 18542377 ~ 18565627 (+) True AMCG00000572
TU190785 other downstream 2613516 19969339 ~ 19972015 (+) True G151522

Expression Profile