RNA id: TU189674


Basic Information

Item Value
RNA id TU189674
length 243
lncRNA type sense_over
GC content 0.48
exon number 2
gene id AMCG00000514
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16811453 ~ 16814365 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctaGATTTTTTGGAAATGGACTCGTAACTGACACTGACCACGATCATTGGTACAAACAGCGCAGAATTATGGACCCAGCCTTCAGTCATTCgTACCTGAAAGGGTTAATGGGCATTTTCAATGAAAATGCTGAAGGTCTGATGGAGAAGCTGGAGGAGGGGGCCGAGAGTCAGGCTCCAGTCAACATCCACAACCTGGTGAACGCTGTGACCCTGGATGTCATCGCAAAGGTTCACCTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189639 lncRNA upstream 88826 16681915 ~ 16722627 (+) True G150689
TU189636 lncRNA upstream 161879 16647905 ~ 16649574 (+) True G150687
TU189633 lncRNA upstream 161879 16648065 ~ 16649574 (+) False G150687
TU189631 lncRNA upstream 164538 16645128 ~ 16646915 (+) True G150686
TU189578 lncRNA upstream 620432 16190820 ~ 16191021 (+) True G150642
TU189742 lncRNA downstream 384494 17196477 ~ 17501853 (+) True G150767
TU189793 lncRNA downstream 736227 17548210 ~ 17548508 (+) False G150811
TU189824 lncRNA downstream 843593 17655576 ~ 17702341 (+) True G150831
TU189855 lncRNA downstream 946530 17758513 ~ 17759502 (+) False AMCG00000525
TU189893 lncRNA downstream 1057315 17869298 ~ 17870290 (+) True G150877
AMCG00000512 mRNA upstream 9659 16796093 ~ 16801794 (+) True AMCG00000512
AMCG00000495 mRNA upstream 65709 16740684 ~ 16745744 (+) True AMCG00000495
AMCG00000486 mRNA upstream 519956 16280906 ~ 16291497 (+) True AMCG00000486
AMCG00000490 mRNA upstream 579022 16216282 ~ 16232431 (+) True AMCG00000490
AMCG00000492 mRNA upstream 595982 16208705 ~ 16215471 (+) True AMCG00000492
AMCG00000513 mRNA downstream 2860 16814843 ~ 16849247 (+) True AMCG00000513
AMCG00000502 mRNA downstream 132077 16944060 ~ 16944477 (+) True AMCG00000502
AMCG00000498 mRNA downstream 194486 17006469 ~ 17051834 (+) True AMCG00000498
AMCG00000503 mRNA downstream 292097 17104080 ~ 17106602 (+) True AMCG00000503
AMCG00000504 mRNA downstream 358267 17170250 ~ 17183080 (+) True AMCG00000504
TU189044 other upstream 2657613 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 3118864 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 4083550 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 4825738 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 6276316 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 124010 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 733471 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 1341881 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 1605197 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 1730394 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile