RNA id: AMCG00000520


Basic Information

Item Value
RNA id AMCG00000520
length 1550
RNA type mRNA
GC content 0.38
exon number 5
gene id AMCG00000520
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17795348 ~ 17800754 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAGAGTTAAGATCTCCATCTGGACACGCACAGCTGCCAAGaaaacaaatcaaagaggATTCACCTTTTGTTTCACCCTCCTTTCCCATTCCAGAGTTCAAGGAGGCCTTTTCCTTATTCGATAAGGATGGCGATGGCACAATCACAACGAAAGAGCTGGGCACCGTCATGCGGTCGCTGGGTCAGAACCCCACAGAGGCGGAGTTGCAGGACATGATCAACGAGGTGGACGCGGATGGAAATGGAACGATTGACTTTCCTGAGTTCTTGACCATGATGGCCagaaaaatgaaagacacaGACAGCGAGGAGGAGATTCGTGAGGCCTTCCGGGTATTTGACAAGGATGGTAACGGCTACATCAGTGCAGCTGAGCTACGCCATGTCATGACAAACCTAGGGGAGAAATTAACAGACGAAGAAGTAGACGAAATGATCAGAGAAGCAGACATAGACGGAGACGGACAGGTTAACTACGAAGAATTTGTACAAATGATGACTGCAAAATGAGGCTCTCCTGACCTCCCCCTGTCCCtcttagaagaaaaaaaaaaatcagtcaaaTGTTTTACTTACCTCTtgcaaaaatgttcatttattCATACTGTTTCTGTatagaaaacataattgaatgttgaaaagaaaaaaaaaatccttctgtccaattacaataagaaaaacgagaaaaaaattgaaaaaaaaaaatcttataaaAATATCTGCATGTAATGGTTGGTGGTCCTGTCCCCAAAGATCAGTTAagcatcaatttaaaaatacctatactaccttaaaacaaaaaaagcacttgGTGAACTCCTTAAAAAAAGTTCCATTTGCTAGTAATACTGTTTGGGCtggccattttattttgtttttttcatgcatgTAGCTTGAGAGTTGAGCACAGTCTGGTGTATGAAAACGTGCTAATTCCACAGAAATGTTGTATTGTTGGTATAGTCCAGTTTGTATTTGGAACAGAGATGCAGTGCAGAAAAGAGGCTCTTAATTGTAAATCCAGAAAGCGAGTGGGGAATTTGCAGTGTGCTCAAAAAAACCATTAAaagatcttaaaaaaaaaaaaaaaaaaaaaaaatacggtTGGCATGTTCGTATTTCGGAACATTGTTACCTTGTTGTGCGTTGCACTATAGTGAAAGAAGTGTCCAGTTGTGACCTTTCACTAAATATAAAGTGATTCTTAGCAAGGGAGCATCATCAAACTTCACATTTCTATCTTCTGTTTTCAACTCTGACATGAAAGTGTCAAGTGATCATGTATATCTACAGTACATAGGATTTCGGCACAAAGTCTTCTAGGCTGTTCATCAGATTCCAGTTTACATTCATTCCAAGTTGTACATGCTAGTCttctatatataattttttttttttttttttttttccaataaaagACCATgaactttaaacatttttgagcattgtttgtttgtttgtgtgtgtgagactaaTGGGAGGCTTGATAATGGGGGGGCTGCTTTATTTGGGGGTTGTGTGCATCTTTCTTAActattcaataaaac

Function

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189855 lncRNA upstream 35846 17758513 ~ 17759502 (+) False AMCG00000525
TU189824 lncRNA upstream 93007 17655576 ~ 17702341 (+) True G150831
TU189793 lncRNA upstream 246840 17548210 ~ 17548508 (+) False G150811
TU189742 lncRNA upstream 293495 17196477 ~ 17501853 (+) True G150767
TU189674 lncRNA upstream 983365 16811453 ~ 16811983 (+) False AMCG00000514
TU189893 lncRNA downstream 68544 17869298 ~ 17870290 (+) True G150877
TU189913 lncRNA downstream 149180 17949934 ~ 17968712 (+) False G150886
TU189912 lncRNA downstream 166998 17967752 ~ 17971252 (+) True G150886
TU189938 lncRNA downstream 173571 17974325 ~ 17974800 (+) True G150909
TU189942 lncRNA downstream 193805 17994559 ~ 18063346 (+) True G150913
AMCG00000527 mRNA upstream 27260 17760703 ~ 17768088 (+) True AMCG00000527
AMCG00000525 mRNA upstream 35766 17748510 ~ 17759582 (+) True AMCG00000525
AMCG00000526 mRNA upstream 47326 17719649 ~ 17748022 (+) True AMCG00000526
AMCG00000530 mRNA upstream 255939 17529717 ~ 17539409 (+) True AMCG00000530
AMCG00000506 mRNA upstream 364851 17427522 ~ 17430497 (+) True AMCG00000506
AMCG00000542 mRNA downstream 83075 17883829 ~ 17938428 (+) True AMCG00000542
AMCG00000543 mRNA downstream 158050 17958804 ~ 17962974 (+) True AMCG00000543
AMCG00000537 mRNA downstream 198053 17998807 ~ 18004848 (+) True AMCG00000537
AMCG00000536 mRNA downstream 210246 18011000 ~ 18019882 (+) True AMCG00000536
AMCG00000546 mRNA downstream 293235 18093989 ~ 18100872 (+) True AMCG00000546
TU189794 other upstream 246840 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 857066 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 3641508 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 4102759 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 5067445 12679670 ~ 12727903 (+) True G149859
TU190029 other downstream 353110 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 616426 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 741623 18542377 ~ 18565627 (+) True AMCG00000572
TU190785 other downstream 2168585 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 3041184 20841938 ~ 20843463 (+) True G151676

Expression Profile