RNA id: AMCG00000527


Basic Information

Item Value
RNA id AMCG00000527
length 2107
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00000527
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17760703 ~ 17768088 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCGGTCAGTGGGGCAGCTTATCGAAGTCAACACGCGCTCTGCCACACCGGTCAGCGAGGGAAACTTCTACTGAAGCGCGAGATAAGACTACAGCAGCAGTCTGTGGTTTTCAGGGGTCAAAGCCAGAGTGGGGGACACGGACCAGGTGGAGGGAAGAAGGATGACAAGgataagaagaagaaatacGAGCCTCCGATCCCCACCAGAgtggggaagaagaagaagaaatcaaaGGGCCCAGATGCTGCCAGCAAGTTGCCTTTAGTCACTCCTCACACTCAGTGTCGGCTGAAGCTGCTGAAACTGGAAAGAATTAAGGACTACCTGCTCATGGAGGAGGAATTCATCAGAAATCAGGAACAGATGAAGCCCTTAGAGGAGAAACAAGAGGAAGAGAGGTCAAAGGTTGATGATCTGAGGGGGACGCCCATGTCTGTGGGAACCCTGGAGGAGATCATAGATGACAACCATGCTATAGTGTCCACGTCCGTGGGCTCGGAGCACTATGTCAGTATTCTGTCCTTTGTGGACAAGGATCTGCTCGAGCCGGGCTGCTCCGTCTTGTTGAACCACAAGGCCAGACTGTCAGATATGGAGATGTTTTTGTTCAAACCTAATCTACTATGGTTTGGTCTGCAGGTTCATGCTGTCATAGGGGTGTTAATGGACGACACAGATCCTTTAGTCACCGTGATGAAGGTGGAGAAAGCCCCACAGGAGACCTATGCTGACATCGGAGGGCTGGATAACCAAATCCAGGAAATAAAGGAATCAGTGGAGTTGCCTCTCACCCACCCAGAGTATTACGAGGAGATGGGAATCAAGCCTCCAAAGGGAGTTATTCTGTATGGGGCCCCCGGCACAGGCAAGACTCTGCTGGCGAAGGCGGTGGCCAACCAGACCTCGGCCACGTTCCTGCGGGTGGTCGGCTCTGAGCTCATCCAGAAGTACCTGGGCGACGGGCCCAAGCTGGTCAGGGAGCTGTTCAGGGTGGCCGAGGAGCACGCGCCCTCCATCGTGTTCATCGATGAGATTGACGCCATTGGGACGAAGAGGTATGACTCCAACTCCGGGGGGGAGCGTGAGATCCAGAGGACCATGCTGGAGCTCTTGAATCAGCTGGATGGCTTCGACTCTCGAGGGGACGTTAAAGTCATCATGGCCACAAACAGGATAGAGACCCTGGACCCAGCCCTCATCAGGCCAGGACGAATTGATCGTAAGATCGAGTTTCCGCTGCCCGATGAGAAGACCAAAAGAAGAATCTTCCAGATCCACACGAGTCGGATGACCCTGGCCGAGGACGTGACGCTGGATGACTTAATTTTGGCCAAAGACGATCTCTCCGGGGCAGATATTAAGGCTATTTGCACTGAAGCCGGCCTGATGGCGTTGCGAGAGCGCAGGATGAAAGTCACCAATGAAGACTTCAAGAAGTCGAAGGAGAACGTCCTGTACAAGAAGCAGGAGGGCACGCCCGAGGGACTCTACCTTTAAGTTCAGAAAGAAACCCTTTTTCATGTGTTATTACTTTTAGCAAATACATGTCATGTAAGGTTCTGAAAAGGTAATAAATGCCATTTTCTCTGATTAGAGCTTTTGATATGTGTGCATGAAATGTGATGTTTCTGTTTGAGCGGATCAGGGAGTCGTTTATTCTAAACCACCTATTTGacaataaattgtgtaatttcagaaagaaaaaatgtcatttttattgtaaaagcaTTCTCTCATACATGTCTGAATGACTTTAGTTGGGAGTTTAATAGGAATGTTTGGAgcagaattattttatattaaaagcgTTATACTTCAGATTTGAAGCGGTTTTCTCTCTGGGTGTGAAAAAGCAGTAGCACTGTGCACTGCTTATAGTTCATTCATGTTACACAATTGCTTCTACTGATTCCAGATCTAGATAACAAGTAGATAAGTGTAAAACTAGCTGAATTAGAAGTAATTTTCTTATAGGGTAGTGGGTGGAGCATAAACTTAGTTATTTAACCTATAATCATCAGTAAATTAGGTGAGACAAGATTGCTGTTATTCACTCCCATAAAATTATATCCTTATGTACAATAAACTGAATGCCTTTGTA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189855 lncRNA upstream 1201 17758513 ~ 17759502 (+) False AMCG00000525
TU189824 lncRNA upstream 58362 17655576 ~ 17702341 (+) True G150831
TU189793 lncRNA upstream 212195 17548210 ~ 17548508 (+) False G150811
TU189742 lncRNA upstream 258850 17196477 ~ 17501853 (+) True G150767
TU189674 lncRNA upstream 948720 16811453 ~ 16811983 (+) False AMCG00000514
TU189893 lncRNA downstream 101210 17869298 ~ 17870290 (+) True G150877
TU189913 lncRNA downstream 181846 17949934 ~ 17968712 (+) False G150886
TU189912 lncRNA downstream 199664 17967752 ~ 17971252 (+) True G150886
TU189938 lncRNA downstream 206237 17974325 ~ 17974800 (+) True G150909
TU189942 lncRNA downstream 226471 17994559 ~ 18063346 (+) True G150913
AMCG00000525 mRNA upstream 1121 17748510 ~ 17759582 (+) True AMCG00000525
AMCG00000526 mRNA upstream 12681 17719649 ~ 17748022 (+) True AMCG00000526
AMCG00000530 mRNA upstream 221294 17529717 ~ 17539409 (+) True AMCG00000530
AMCG00000506 mRNA upstream 330206 17427522 ~ 17430497 (+) True AMCG00000506
AMCG00000507 mRNA upstream 360356 17377382 ~ 17400347 (+) True AMCG00000507
AMCG00000520 mRNA downstream 27260 17795348 ~ 17800754 (+) True AMCG00000520
AMCG00000542 mRNA downstream 115741 17883829 ~ 17938428 (+) True AMCG00000542
AMCG00000543 mRNA downstream 190716 17958804 ~ 17962974 (+) True AMCG00000543
AMCG00000537 mRNA downstream 230719 17998807 ~ 18004848 (+) True AMCG00000537
AMCG00000536 mRNA downstream 242912 18011000 ~ 18019882 (+) True AMCG00000536
TU189794 other upstream 212195 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 822421 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 3606863 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 4068114 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 5032800 12679670 ~ 12727903 (+) True G149859
TU190029 other downstream 385776 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 649092 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 774289 18542377 ~ 18565627 (+) True AMCG00000572
TU190785 other downstream 2201251 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 3073850 20841938 ~ 20843463 (+) True G151676

Expression Profile