RNA id: AMCG00000543


Basic Information

Item Value
RNA id AMCG00000543
length 1530
RNA type mRNA
GC content 0.51
exon number 6
gene id AMCG00000543
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17958804 ~ 17962974 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGCTGCTCTGCTCACAGCCCTGCGGACCACGGCGCTGCACCGACATGGATACCTATCCTACTGTGAACGGTACCCGGGGGGATTATAACATGGGAGACCGGGATTCAAAGCTTGGAAAACAAGTGCCCTGCATGGAGGACAGGCTGGACAGTGGCGTGGATTCCCTGAAGGAGGACGAGTATCAGTGCATGGTGCTGGAAATGGAGAACATGGACCTGACCCGAGCCGAGCCCGTGCGCAGGGACGACAACTGCGAGCCCTGGAAACTGCAAGTGACCGACGACGGAGACACATTGCTTCACCTCGCCGTTATCCACGAGGCTACCGACTGCGCCATCCAGATTATTGAACAGTGTCGCAATGACCCCTACCTGAATGTGCAGAACAACCAGAGAcagACTGTGCTCCACCTGGCAGTGATCATGGAGCAGCCCCAGGTTGTGGACAAACTCCTAAAGTCTGGCTGTGATCCTCATCTTGCTGACGAGAGTGGCAACACCGCACTGCACATCGCCTGCAAACAGGGCTCCCTGCGCTGCTTTGGCGTCCTGATCCAGGGCTGTGGGCAGCACCTCTCCACCATCCTCAGCACCAACAACTACAACGGCCACAACTGCATTCACCTGGTTTCCATCCATGGCTATCTCTCCTTGTTGGAAAGACTCATTCATCTTGGTGCTGATATTAATGCACAGGAGCTGTGCAATGGCCGGACCCCTCTGCACTTGGCCGTGGACCTCCAGAACGTAGAGCTGGTGAAACTGCTCATCTCCAAAGGAGCTGATGTCAACAGCCTCAGCTATGGCGGCTACACCCCGTACCACCTGACCTACGGCCGGCAGAGCACTGAGATCAAGCAGCTGCTGTTGCCTCTGACTGCAAAAGAGCTGAGAGAGCTGCCCGACAGCGAATCCGAGGACAGCGAGGAGGAGGTCATGTCCGATGATGATTTATACGACGATATCCAGTTGGTTGGGCAGTAGTGGGCGTTCCAGAATCTCCATTGCTCTCTGGAATGGGCATGAAGCAGGAAAGTGGCAGCAGTTGGCAGGTCCCAGAATCAGTCTTGTCCAATCGCAAGTGCCAGCACAAGGCAGCGTGTTGCCAGGCTGTCGAGGGCACGGACAGGAGAGGAGGTCGAGCTGGCGAGACACGGGAATCGTGTTGGCTTAGGGATCGAGGGACACGGTGAACCCAAGAACACCACTGGGACCATGGGAAAACATGCACACCGCAGATGACCTGTCTGGTTTCTCCAAAGGACAATGAGTCCTTAATAAGCCATGATTTCACACCAACTTGTGTATCACGAGTATAACATGTATAGTGTATATAAgcagagatatatatatatattttttgttaatgaaatcttgaaaaccaaaaaaaaaaaaaagtgtatatttgtaaattgtttattttttttcaaacctgATGGAATGATGTGTAGAGTTTCATTTGTTTGGCTGATGCCTAAAATATCCAAACTAACTTGACTCctgcagaataaaaaatactccATGTGAA

Function

GO: NA

KEGG:

id description
K04734 NFKBIA; NF-kappa-B inhibitor alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189893 lncRNA upstream 88514 17869298 ~ 17870290 (+) True G150877
TU189855 lncRNA upstream 199302 17758513 ~ 17759502 (+) False AMCG00000525
TU189824 lncRNA upstream 256463 17655576 ~ 17702341 (+) True G150831
TU189793 lncRNA upstream 410296 17548210 ~ 17548508 (+) False G150811
TU189742 lncRNA upstream 456951 17196477 ~ 17501853 (+) True G150767
TU189912 lncRNA downstream 4778 17967752 ~ 17971252 (+) True G150886
TU189938 lncRNA downstream 11351 17974325 ~ 17974800 (+) True G150909
TU189942 lncRNA downstream 31585 17994559 ~ 18063346 (+) True G150913
TU189986 lncRNA downstream 115140 18078114 ~ 18081341 (+) True G150951
TU189989 lncRNA downstream 121486 18084460 ~ 18084687 (+) True G150953
AMCG00000542 mRNA upstream 20376 17883829 ~ 17938428 (+) True AMCG00000542
AMCG00000520 mRNA upstream 158050 17795348 ~ 17800754 (+) True AMCG00000520
AMCG00000527 mRNA upstream 190716 17760703 ~ 17768088 (+) True AMCG00000527
AMCG00000525 mRNA upstream 199222 17748510 ~ 17759582 (+) True AMCG00000525
AMCG00000526 mRNA upstream 210782 17719649 ~ 17748022 (+) True AMCG00000526
AMCG00000537 mRNA downstream 35833 17998807 ~ 18004848 (+) True AMCG00000537
AMCG00000536 mRNA downstream 48026 18011000 ~ 18019882 (+) True AMCG00000536
AMCG00000546 mRNA downstream 131015 18093989 ~ 18100872 (+) True AMCG00000546
AMCG00000549 mRNA downstream 143917 18106891 ~ 18118266 (+) True AMCG00000549
AMCG00000547 mRNA downstream 162834 18125808 ~ 18153361 (+) True AMCG00000547
TU189794 other upstream 410296 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 1020522 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 3804964 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 4266215 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 5230901 12679670 ~ 12727903 (+) True G149859
TU190029 other downstream 190890 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 454206 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 579403 18542377 ~ 18565627 (+) True AMCG00000572
TU190785 other downstream 2006365 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 2878964 20841938 ~ 20843463 (+) True G151676

Expression Profile