RNA id: TU190161


Basic Information

Item Value
RNA id TU190161
length 1847
RNA type TUCP
GC content 0.54
exon number 3
gene id AMCG00000550
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18411443 ~ 18419576 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGGAGCTGTACGCACAGGTGCTGCTGAGCTGCTACGGCGTGACACTGGGCGTGGAGTCCACCATCGTCAGCCCCAGCTATGTGTACCGGGCGTACTGCGGGGACGTGCCCTGGACGCCCGGCCTGGACTGGCTGACCACAAACGTGCAGCTCTTCCAGCTCGTCCTCAAGGCCTTCAGGTTCAGCTTCAAGCTGCTGTTCGACCAGGCCAGCCTGGGGCCGCTGGAGGGCCCAGAGGAGCTGCTGGGCTGGCTGGAGGAGTGCGAGCGGGACTGGTACGTGGGCCTGGTGTCGGACAGCGGCTGGCAGGACGCCGTGCTGCAGGAGAAGCCCTTCCTCTTCTCGCTGGGCCACGACCTCACCATGGGCACCTACACCGGTCGGGTGCTGACACTGCGGGAGCTGCCGGTGCAGGTGGGCCGTCTGAACGCGGAGGGCGTGCGCGGCCAGTGGGCCAACCTGTCCTGGGAGCTGCTGTACGCCACCAACGACGACGAGGAGCGCTACAGCATCCAGGCGCACCCCGTCCTGCTGCGCAACCTCACCGTGCAGGCCGCCGACCCCCCACTGGGCTACCCCATCCACTCGTCCCGCCCGCTGCACCTGCCCTGTTTCTGACCCCGCCCGGGCCCCCAGGGCCCCCAGGGGCCACGAGGCAATGCGACGGAGAGGCGAGGATCGGCCCAGTCCGGTTAATGGCAGTGAGCCCGAATGACGCAAATTGTCAAGGTTTTGGGTTTTGGAGGTAAAAGGCTTCCTGGCCCTGCAgcctgcgagagagagagagagtgcaaggGACGTTTACAAAAAGGATTCCGTTTTTATACGAGAGAGAAATCTCCTTTCAGCACACACTACAGCACGGGTAACACAAGGGAAACGTTCGCTATTACCGTTTAACACTCTATTCCCCGTCGCCGTGATTCCCGTTCGGCCGAAAGGAAACCTACAGTAACAGGAAGTGGACGAGTAGATCGCTGCCCACTTGATACCAGAGCCCGGCCCCTCTGCACCCCACTGTCTCTTGTTACTGTAGATCTCTGCCCACTTTATACCGGACCCTCGGGGGGCCGCGGACCCTCCAGGACCAACGAGCTGCTGCAGTCCGTCCCCCGTCCATCCCACGATCGAACACCGTTTCAGTGTCAATCACAACACACACGCGTTTGGCTTTTATTAAAGTCAAATTAACGGTTTggtattttttgtacattttaagcTGAATAATGTACCATTTGTTGATCAAAAGGTACTTCAACTATAATATCCTCATATCCCGAGTGTGACGTTTTTGTTTCGAGACACAACCCCCGTGGGAAAGCCGTCTCTCTGCTGCCGAGACTCACTCCCTCACAGCTCCGGTGCTGACCCAGGACATTttagtatattgttttttctaaaatatggaatgtgtttttctactttttatACCCTCCTACGGGGACGGGCGCTCGTTAAACGCAGGGGAAACCGCAAACAGAGCGACTCTAAACTCCGCTAAATCCACTAAAGAACTTCTGTTAATTGCACTCTGTCGTTATTTAACGAGCACACGTCCGCTCACGCACTGAGgcgagaaaaagaaaaaaaaaaaaaaaaaaaagacacaaaaaaacactcaacACTGTGCCTTTGGCTTTAATTGTGTCACTCTAATACAGTTGCTAATTGTTATCCTCTGCCTTCACTTCTCTCCCTCGTCTCATTATCTCATTGTTTTCCGTTTGTTTGCTGTGTCACAACTTTctgtaaatagatttttttaagctGTCGTTCCTGtaaagtatgtatttgtatataaacgCAGACAcacttgtatttatattataggCTTTTGAAAGAAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190136 lncRNA upstream 32134 18384600 ~ 18385046 (+) True G151052
TU190134 lncRNA upstream 56888 18359247 ~ 18360292 (+) True G151050
TU189989 lncRNA upstream 332493 18084460 ~ 18084687 (+) True G150953
TU189986 lncRNA upstream 335839 18078114 ~ 18081341 (+) True G150951
TU189942 lncRNA upstream 353834 17994559 ~ 18063346 (+) True G150913
TU190202 lncRNA downstream 70380 18489851 ~ 18530757 (+) True AMCG00000573
TU190355 lncRNA downstream 439792 18859263 ~ 18859464 (+) True G151217
TU190357 lncRNA downstream 443553 18863024 ~ 18868044 (+) True G151219
TU190367 lncRNA downstream 500450 18919921 ~ 18921366 (+) True G151226
TU190511 lncRNA downstream 711154 19130625 ~ 19130890 (+) True G151310
AMCG00000551 mRNA upstream 12383 18392416 ~ 18404797 (+) True AMCG00000551
AMCG00000555 mRNA upstream 80733 18308336 ~ 18336447 (+) True AMCG00000555
AMCG00000562 mRNA upstream 165516 18245088 ~ 18251664 (+) True AMCG00000562
AMCG00000563 mRNA upstream 176238 18222486 ~ 18240942 (+) True AMCG00000563
AMCG00000561 mRNA upstream 212200 18201482 ~ 18204980 (+) True AMCG00000561
AMCG00000552 mRNA downstream 9444 18428915 ~ 18433601 (+) True AMCG00000552
AMCG00000553 mRNA downstream 60900 18480371 ~ 18483206 (+) True AMCG00000553
AMCG00000573 mRNA downstream 105718 18525189 ~ 18530362 (+) False AMCG00000573
AMCG00000572 mRNA downstream 114998 18534469 ~ 18549967 (+) False AMCG00000572
AMCG00000571 mRNA downstream 149694 18569165 ~ 18583738 (+) True AMCG00000571
TU190029 other upstream 257859 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 868672 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 1478898 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 4263340 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 4724591 13690839 ~ 13692589 (+) True G150069
TU190212 other downstream 122906 18542377 ~ 18565627 (+) True AMCG00000572
TU190785 other downstream 1549868 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 2422467 20841938 ~ 20843463 (+) True G151676

Expression Profile