RNA id: AMCG00000562


Basic Information

Item Value
RNA id AMCG00000562
length 687
RNA type mRNA
GC content 0.63
exon number 5
gene id AMCG00000562
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18245088 ~ 18251664 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtcCGCCGTGCCTGACGGCAAGAAACTGGTCCGGAGCCCCAGCGGACTGCGGATGGTGCCGGAGAACGGGGCCTTCAACAGCCCCTTCTCGCTGGACGAGCCGCAGTGGGTCCCGGATAAGGAGGTGAGGGGGCGGCGGGGCTGTAAACAGTGGGATCACCACTGCCGCCGCTGTGGAAAGTGCTTCTGTGACAAGTGCTGTAGTAAGAAGGTGGCGCTGCCGCGGATGTGCTTCGTGGACCCGGTGCGGCAGTGCGCCGAGTGCGGCCTGGTCTCGCAGAGGGAGGCGGAGTTCTACGACAAGCAGCTCAAAGTCCTGATGAACGGAGGCACATTCCTCGTCACTCTAGGTTCCTCGGAGAAGTCTGAGACCATGGTGTGCCGGCTCTCGAACAACCACAGGTACCTGTTCCTGGACGGGGAGAGCCACTTCGAGGTGGAGCTGTCTCGGATCTCCAGTGTGCAGGTGCTGACGGAGGGCTTCACCCCCGGAGGGGGAAACTCGCGGGCCAGCGGCATGCTGCTGCAGTATAAAGCGGTGGGCTCCCCGGAGCAGCAACAGCTGCGCATGGAGACAGCAGACGACAAGAAGACGGCCTCCACCTGGCTGGCAGCCATGCACAAGGTACGGGTCTCTCGATATCGGCCCCTGATCGCAGCGCTGGCGCAGGCGACTGTTTGTTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24779 ZFYVE21; zinc finger FYVE domain-containing protein 21

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189989 lncRNA upstream 160401 18084460 ~ 18084687 (+) True G150953
TU189986 lncRNA upstream 163747 18078114 ~ 18081341 (+) True G150951
TU189942 lncRNA upstream 181742 17994559 ~ 18063346 (+) True G150913
TU189938 lncRNA upstream 270288 17974325 ~ 17974800 (+) True G150909
TU189912 lncRNA upstream 273836 17967752 ~ 17971252 (+) True G150886
TU190134 lncRNA downstream 107583 18359247 ~ 18360292 (+) True G151050
TU190136 lncRNA downstream 132936 18384600 ~ 18385046 (+) True G151052
TU190202 lncRNA downstream 238187 18489851 ~ 18530757 (+) True AMCG00000573
TU190355 lncRNA downstream 607599 18859263 ~ 18859464 (+) True G151217
TU190357 lncRNA downstream 611360 18863024 ~ 18868044 (+) True G151219
AMCG00000563 mRNA upstream 4146 18222486 ~ 18240942 (+) True AMCG00000563
AMCG00000561 mRNA upstream 40108 18201482 ~ 18204980 (+) True AMCG00000561
AMCG00000545 mRNA upstream 68872 18161502 ~ 18176216 (+) True AMCG00000545
AMCG00000547 mRNA upstream 91727 18125808 ~ 18153361 (+) True AMCG00000547
AMCG00000549 mRNA upstream 126822 18106891 ~ 18118266 (+) True AMCG00000549
AMCG00000555 mRNA downstream 56672 18308336 ~ 18336447 (+) True AMCG00000555
AMCG00000551 mRNA downstream 140752 18392416 ~ 18404797 (+) True AMCG00000551
AMCG00000550 mRNA downstream 159779 18411443 ~ 18419576 (+) True AMCG00000550
AMCG00000552 mRNA downstream 177251 18428915 ~ 18433601 (+) True AMCG00000552
AMCG00000553 mRNA downstream 228707 18480371 ~ 18483206 (+) True AMCG00000553
TU190029 other upstream 85767 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 696580 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 1306806 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 4091248 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 4552499 13690839 ~ 13692589 (+) True G150069
TU190161 other downstream 165516 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 290713 18542377 ~ 18565627 (+) True AMCG00000572
TU190785 other downstream 1717675 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 2590274 20841938 ~ 20843463 (+) True G151676

Expression Profile