RNA id: AMCG00000568


Basic Information

Item Value
RNA id AMCG00000568
length 3222
RNA type mRNA
GC content 0.59
exon number 7
gene id AMCG00000568
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18660117 ~ 18678114 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagaggcaggaagAGCCGTAattgctgctgctggaggaggaggaggaggaggagtgagaGAGCAGGCAGAGCAGCCCGTCCCAGCGGCCGTCCTGCGCGCTGTCCCCGGGAGGATGTGAGCGGGGAGACGCAGCACAAAGCGCAGCGACAGGAGGGGCACCGGCTCCCAGCTCTGCAGGCATGGCATCCGACATCACTCCTGAGGCCATCGGATTCCTGTCGGCGGTGGGCGTCTTCATCGTGGTGCTGGCCGTGCTCTTCCTCTTCATCAACAAGAAGCTGTGTTTCCACCGGGTGGGCGGCTTGCCCTGCCTGGAGCAGCGCAGGAAGAAGAGGCACTCCCGGGAGAGGGCAGGGGTGCACGAGGGCCTGGTAAACAGTTTCGGGCAAGACGAGGCCCTGTCCACGTCCTCGGACAGCGACGACGAGATCACTAAGCAGTTCGAGATCTCGGTGTCGCGCTCGCAGAGTTTCCGCTCCGCTGCCGCCACCGCCGCCGAAAAGGCCGCACCGCCCCACCCCGAGCGGCGCCACAAGTTCTCCCGCCTGCTGTCCAatcaggaggagggcagcacgGAGCCCTCGGACTGCGAAGATGGCAACAGGCTCAGCCGGCTGAGCTACCAGGACGCCCCGTCATACCGGGACGATGCCACGGGACCCCAGGGAGCCGCGCTCGTCTCGGAGGAGCTGGGTGGGGAGCTGCGCCGGACCTCCAGGGCCACGGAGGGCAGCCTGGCCCCCAGCATCAGCAGGCAGGCCACAGAGGGCAGCCTGGAGATGGAGACTGCGGTGGACAACCAGGGATACGATGTCAACGACGCCACGGACAGCTCCTCCACCTGGAGCCCCGAGGATCCCGGCATGGGGGAAGTGTCGGCGCCACCAACCGGCTCCCACCAGCCCATCTCCACATGCGGCGACCTCATCATCATCCTGGACTACAAGGTGGAGACGCAGAAGCTGCTGGTCACGGTGGTGGCCGCCCGGGACATCCCTGACAAGGAGCGTAGTGGCATGGACGCCTGGCAGGTGCACGTGGTCCTGCTGCCCAGCAAGAAGCAGCGGCACAAGACAGGTGTGCAGCGGGGCTCAGCGCCACGCTTCAACGAGACCTTCCGCTTCTCCCGGGTGGATCCCACTGAGCTGAGCTGCTACGCGCTGCGCTTCCGTCTGTACGCTGTGGGCAAGATGGTGCGCGAGCGCATGATGGGCGAGAAGCTCTACCACCTCAGCAGCATGAGCCTGGAGGGTGAGATGGAGGCCACCCTGGTGCTGGAGCCCCGCAGCAACATGAAGAGCGCCGACTCCCAGGCCAGCCTGTCCGCCATCTCGCACAGCGACAGTGCCTCGTCCACGCAGTCCCTGTCCCACGGCGGCGTCCCCGAGCTGCTCCTCGGCCTCTCCTACAATGCCACCACCGGCCGGCTGTCTGTTGAGCTCATCAAGGGCAGCCACTTCCGTAACCTGGCCATCAACCGCCCGCCAGACACCTATGGCAAGCTGACGCTGCTCAACTCAATGGGGCAGGAGATCTCGCGCTGCAAGACCTCGGTGCGCCGGGGCCAGCCCAACCCCGTCTACAAGGAGACCTTCATCTTCCAGGTGGCCCTGTTCCAGCTGTCCGACGTCACACTCATGATCTCCATCTACAACCGGCGCAGCATGAAGCGCAAGGAGATGATTGGTTGGATCTCGCTGGGCCAGAACAGCAGCGGCGAGGAGGAGCAGGACCACTGGCTGCTGATGCGCGAGTCCCGCGGCCAGCAGGCCTGTCGCTGGCACGTCCTGCTGGAGTCCTAGAGCCCATGCACTTCTTCccacacctcctcctcctctgctctCCCTGCCAGTGTCCAGCCCTGCCCAGCCCCCACACCCCCTGTGGCAGCCACACCAGGCTGTGCTCCTCAGGAACTGGTCCCTGTTCTGCTGCTGCCCACTCTCTCCAAGTCTCACTTCAGTTGGAGCACATGGCCCCAGGGCTGCTATCTCACATGTCCTGTACTGCTTGCACACCTCTGTACTGACCATGAGCAGAGGGTGGGATCGCCCCACCTTCTGTCCACTCCTTGAAATagctgccccatcccaggatcTGACAGACTGACCGTGCTTATTCACTGTGGCGTAAGGACCTGCGTCTCCTCATAGTGATGTGCCCCCTGGACCCCCAAAGAAAGCCCTGCcccagagaggaggaggaggatgctTTCTGGTGTGGCCACTGCTTTGCACCAAGCCTGTCACTCATCTCTGTACAGAGCTAAGAGCACCCCTCTGAAAACTGTCTGCATCTCAGTGCCGTCTCTGTGCAGCTGTCGTGTCCGAGGGAGAGACTCCAGCTGGTCTTCCTATCTCCACCGGCCTCCCTCCTGCTGTGGGCTGACTGTGCCTGACGCCTGGCTTGCTGCCTGGCCACGAGCCCCACTGCCTGCTCTTGTTCAATTTTCAGCCCTGGTCAGTGGAAGAGAGAGGGGTCCTTTGGGGAGCAGCGTGCTGTGATGAACAGGGGTAATTAAAGTCAGGACTGCATGCCACAGCTCCTGATGTCCAGTCAGTGTGGTGGTATTCAGGAATAGAATGAAGATCTCCAAGGACTGATGGGCAGAATCTGTGATGTCATTAGTCTtaccaccttttttttttttgtatgttgtgtAATTACTATTTGCTTTTCATGGAGTTGGACAGCTGTGTCCCCACAAATACTCTATTTTAATATTCCCCTGTTGCTTTAGGGACAAGCCCTCTGTGTCAAACCCCCAACCAACTCCTCTCCAGCCCTGTCCATTGCTGAGCACCATCTCGACCTATGCATTTCACAGCTGCTGATCGTAAATGGCCACATATGCATGTTCAAAGcccatgtatatatatatattttataaagaaagtAAATATTTGAACCTCTGCTTTATTTCACAGAGAGGTGGTAGAGGGCATGTACTCTTTTCTATTCCAGACAGTAAATCTCTATAAAGTGCCTGTGACTGAGTTTGTGCAGAGGGGAGTGCTACTGTCATGAAAAAGAAACCTGTCTTTATGATAAGCATGTgccattaaacacatttactgcTCTGTAAAGGATGCATGGACCAGTGAATCCTCCTGTACATAAACACAGTGCCTGTGCCATGCATGCAACAATGACTACGCAAGATCTGTCCtgttttgtacatattttatggTCTTTATATCCAGTAAACTGTGATCCATG

Function

GO: NA

KEGG:

id description
K19328 SYT14_16; synaptotagmin-14/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190202 lncRNA upstream 129360 18489851 ~ 18530757 (+) True AMCG00000573
TU190136 lncRNA upstream 275071 18384600 ~ 18385046 (+) True G151052
TU190134 lncRNA upstream 299825 18359247 ~ 18360292 (+) True G151050
TU189989 lncRNA upstream 575430 18084460 ~ 18084687 (+) True G150953
TU189986 lncRNA upstream 578776 18078114 ~ 18081341 (+) True G150951
TU190355 lncRNA downstream 181149 18859263 ~ 18859464 (+) True G151217
TU190357 lncRNA downstream 184910 18863024 ~ 18868044 (+) True G151219
TU190367 lncRNA downstream 241807 18919921 ~ 18921366 (+) True G151226
TU190511 lncRNA downstream 452511 19130625 ~ 19130890 (+) True G151310
TU190549 lncRNA downstream 627132 19305246 ~ 19307462 (+) True G151339
AMCG00000578 mRNA upstream 1180 18654633 ~ 18658937 (+) True AMCG00000578
AMCG00000577 mRNA upstream 7599 18636125 ~ 18652518 (+) True AMCG00000577
AMCG00000581 mRNA upstream 36985 18622402 ~ 18623132 (+) True AMCG00000581
AMCG00000580 mRNA upstream 46771 18610907 ~ 18613346 (+) True AMCG00000580
AMCG00000579 mRNA upstream 53329 18602550 ~ 18606788 (+) True AMCG00000579
AMCG00000569 mRNA downstream 683 18678797 ~ 18690095 (+) True AMCG00000569
AMCG00000587 mRNA downstream 130500 18808614 ~ 18824678 (+) True AMCG00000587
AMCG00000594 mRNA downstream 208334 18886448 ~ 18923025 (+) True AMCG00000594
AMCG00000596 mRNA downstream 250552 18928666 ~ 18947466 (+) True AMCG00000596
AMCG00000595 mRNA downstream 272044 18950158 ~ 18991317 (+) True AMCG00000595
TU190212 other upstream 94490 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 240646 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 500796 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 1111609 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 1721835 16935993 ~ 16938282 (+) True G150750
TU190785 other downstream 1291225 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 2163824 20841938 ~ 20843463 (+) True G151676

Expression Profile