RNA id: AMCG00000571


Basic Information

Item Value
RNA id AMCG00000571
length 1824
RNA type mRNA
GC content 0.61
exon number 16
gene id AMCG00000571
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18569165 ~ 18583738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGGACTCGATATGACGTCTTAATGACGCGACGAGCAGGAAGTGTGCGTGGAGTCATGTGATGGCGGCGGCAGGTCTGTCAGCTGAGCCCGGGTTAGAAACGAGCAGCCACAAGACTGACAGCCTCCGCCGGGACTGCGAGGGCCGGCGCTGAAATGTGGACTGACGTCGAGGGGGCTTTGATCATATTTTAATCGGGACTCACATCGCAGCAATGTCCGACTATGCGAATTACAACCGCAATGTCCAGGTTGGCGACGCGGAGCACGACGGAGAGGCGACACCGTTACTGGCCGGTGGACCCCGCGCCCCAGGCTCATCGGGGGCCTCCTTCGGCTCCTCGGTCTTCAACCTGATGAACGCTATCATGGGCAGCGGCATCCTGGGGCTCGCTTACGCTATGGCCAGCACCGGCATCCTGGGCTTCTGtgtgctgctgctgctcgtCGCATGCCTGGCCTCCTACTCCATCCACCTGCTGCTGAAGCTGTGCGACCAGACCGCCATCACCTCTTATGAAGACCTGGGCTTCCGTGCGTTTCAGCATCCTGGCAAGGTCCTGGTTGCCTGCACCATCCTGGTCCAGAACGTGGGAGCCATGTCTACATACATGTTCATCATCAAGTCTGAGCTTCCTGCAGCCATCACCAACTTCCTGCCGGAACAGCACAGCGGGGCCCCGTGGTATTTGGATGGCAGACTCCTGCTGGTAATAGTGACGGTGTGCATCGTGCTGCCACTGGCCCTGCTCCCCAAGATTGGGTTCCTGGGCTACAGCAGCAGCCTGTCCTTCCTGTTCATGGTCTACTTCGCCGTGGTGATCGTGGTGAAGAAGTGGTCCATTCCCTGCCCTCTGCCCAGCAACGGCACCGTGAGCCTCATGCAGtttgACAATTCCACTGATTGCGTTCCAAAACTGCTCACCATTTCCAGTAAGAGTGCCTACGCGGTGCCGACAATGGCCTTCTCCTTCCTGTGCCACACGGCGGTGCTGCCCATCTACTGCGAGCTGCGCAGGCCCAGCAAGAGACGCATGCAGAACGTGGTGAACAGTGGCATCACCCTGAGCTTCCTTGTCTACCTGCTGTCTGCCCTGTTTGGATACCTCACCTTCTAtgGGCAGGTGGACTCAGAGCTGCTGATGTCCTACGGGCGCTTCCAGCCCCGCGACCCCCTGGTGATGTCGGTGCGCCTGGCCATCCTCTTGGCCGTGCTGCTCACCGTGCCCCTCATCCACTTCCCCGCACGGAAGGCGGTGGTCCTGCTGCTGCACCCCGGCCGGCCCTTCTCCTGGCTGCTGCACTGCCTCGTCACGCTGGCCCTCGTCACCGTCGTGCTGCTGCTCGCTATCTACGTGCCGGACATCCAGAGCGTGTTCGGGGTCGTGGGCTCCACCACCTCCACCTGCCTGCTGTTCGTGTTCCCCGGGCTCTTCTACCTGCGCATCGGCGGAGAGCGCGGCGCGTCCTTCGGCAAACTGAGCGCCGCTGCCCTGGTGGTGTTCGGGGTGTGTGTGGGGCTCCTCAGCCTCTGTCTCATCGTGGTGACGTGGGTGGAGAGCTCCTAGTATCCGCTGAGCTCCTGGTGGCCCCGGGGAGCCCAGGCCCAGGGAGCGTCCCCTCAGAGGCTCGGTTGTCCGGTGGCGGTCCGGTCCCTGCATCTCGGGTTTCATACATAATTGATCAACGACCCTGCAATTTAAATCGGTTAATTTATGGAGAAACTGGACCGGTCTGTGCCTTGGCTTCCCTCtgctgttgggggggggggggggctctgtATTTACAAGGACTGCCTTGACACCCCAACCCTACCTCCAGCCC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14993 SLC38A6, SNAT6; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190202 lncRNA upstream 38408 18489851 ~ 18530757 (+) True AMCG00000573
TU190136 lncRNA upstream 184119 18384600 ~ 18385046 (+) True G151052
TU190134 lncRNA upstream 208873 18359247 ~ 18360292 (+) True G151050
TU189989 lncRNA upstream 484478 18084460 ~ 18084687 (+) True G150953
TU189986 lncRNA upstream 487824 18078114 ~ 18081341 (+) True G150951
TU190355 lncRNA downstream 275525 18859263 ~ 18859464 (+) True G151217
TU190357 lncRNA downstream 279286 18863024 ~ 18868044 (+) True G151219
TU190367 lncRNA downstream 336183 18919921 ~ 18921366 (+) True G151226
TU190511 lncRNA downstream 546887 19130625 ~ 19130890 (+) True G151310
TU190549 lncRNA downstream 721508 19305246 ~ 19307462 (+) True G151339
AMCG00000572 mRNA upstream 19198 18534469 ~ 18549967 (+) False AMCG00000572
AMCG00000573 mRNA upstream 38803 18525189 ~ 18530362 (+) False AMCG00000573
AMCG00000553 mRNA upstream 85959 18480371 ~ 18483206 (+) True AMCG00000553
AMCG00000552 mRNA upstream 135564 18428915 ~ 18433601 (+) True AMCG00000552
AMCG00000550 mRNA upstream 149589 18411443 ~ 18419576 (+) True AMCG00000550
AMCG00000579 mRNA downstream 18812 18602550 ~ 18606788 (+) True AMCG00000579
AMCG00000580 mRNA downstream 27169 18610907 ~ 18613346 (+) True AMCG00000580
AMCG00000581 mRNA downstream 38664 18622402 ~ 18623132 (+) True AMCG00000581
AMCG00000577 mRNA downstream 52387 18636125 ~ 18652518 (+) True AMCG00000577
AMCG00000578 mRNA downstream 70895 18654633 ~ 18658937 (+) True AMCG00000578
TU190212 other upstream 3538 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 149694 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 409844 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 1020657 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 1630883 16935993 ~ 16938282 (+) True G150750
TU190785 other downstream 1385601 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 2258200 20841938 ~ 20843463 (+) True G151676

Expression Profile