RNA id: AMCG00000572



Basic Information


Item Value
RNA id AMCG00000572
length 729
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00000572
representative False

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18534469 ~ 18565627 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGGACCAGGGCTGCCCGCGATGCAAAACCACCAAATACAGGAACCCGTCGCTCAAGCTGATGGTGAACGTGTGCGGCCACACGCTGTGTGAGAGCTGCGTGGAGATGCTGTTTGTCCGCGGCTCTGGCAACTGCCAGGAGTGCGACACGCCGCTCAGGAAGAGCAACTTCCGGGTGCAGCTGTTCGAGGACCCGGCCGTCGACAAGGAGGTGGAGATAAGGAAGAAGGTGCTGAAAATCTACAATAAGAGGGAGCGCGACTTTCCCAGCCTGCGCGAGTACAACGACTACCTGGAGCTGGTGGAGGAGATCATCTACAACCTGACGAACAATGTGGATGTGGAGAACACAAAGCAGGCCATGGAACAGTACCAGAGGGAGAACAAAGACGTGATTCAAAGGAACAAGGTCAAACTGCTGGAGGTGCAACTGGAGAAACAGCGGCAAATAGTCAAGCCCACCACCTTCTCCACCGGCATCATCATGgGCCAGAAGATCTCCCTGCAGCCGGTTCCCCAGATTGCCGAGGTGCTGTACCGCTACCAGCCGCTGCACATCGACACCTGGGGGCCCCCCGTGCCGGATCTGGACCAGCTGGGCCGTCTGGGCGGGCCGGACCCCAGACCTGTACTGCGCCTCTATGGGCTGGGTGGACTGCTGGGAGAACGGTCCCAGCTAGAGTTCGGGGCCTCCGAGTCCCCGCCTCCTGCCGTATCGGGTCCGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU190202 lncRNA upstream 3712 18489851 ~ 18530757 (+) True AMCG00000573
TU190136 lncRNA upstream 149423 18384600 ~ 18385046 (+) True G151052
TU190134 lncRNA upstream 174177 18359247 ~ 18360292 (+) True G151050
TU189989 lncRNA upstream 449782 18084460 ~ 18084687 (+) True G150953
TU189986 lncRNA upstream 453128 18078114 ~ 18081341 (+) True G150951
TU190355 lncRNA downstream 309296 18859263 ~ 18859464 (+) True G151217
TU190357 lncRNA downstream 313057 18863024 ~ 18868044 (+) True G151219
TU190367 lncRNA downstream 369954 18919921 ~ 18921366 (+) True G151226
TU190511 lncRNA downstream 580658 19130625 ~ 19130890 (+) True G151310
TU190549 lncRNA downstream 755279 19305246 ~ 19307462 (+) True G151339
AMCG00000573 mRNA upstream 4107 18525189 ~ 18530362 (+) False AMCG00000573
AMCG00000553 mRNA upstream 51263 18480371 ~ 18483206 (+) True AMCG00000553
AMCG00000552 mRNA upstream 100868 18428915 ~ 18433601 (+) True AMCG00000552
AMCG00000550 mRNA upstream 114893 18411443 ~ 18419576 (+) True AMCG00000550
AMCG00000551 mRNA upstream 129672 18392416 ~ 18404797 (+) True AMCG00000551
AMCG00000571 mRNA downstream 19198 18569165 ~ 18583738 (+) True AMCG00000571
AMCG00000579 mRNA downstream 52583 18602550 ~ 18606788 (+) True AMCG00000579
AMCG00000580 mRNA downstream 60940 18610907 ~ 18613346 (+) True AMCG00000580
AMCG00000581 mRNA downstream 72435 18622402 ~ 18623132 (+) True AMCG00000581
AMCG00000577 mRNA downstream 86158 18636125 ~ 18652518 (+) True AMCG00000577
TU190161 other upstream 114998 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 375148 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 985961 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 1596187 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 4380629 14133138 ~ 14153840 (+) True AMCG00000412
TU190785 other downstream 1419372 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 2291971 20841938 ~ 20843463 (+) True G151676

Expression Profile