RNA id: TU190202


Basic Information

Item Value
RNA id TU190202
length 2257
lncRNA type sense_over
GC content 0.49
exon number 3
gene id AMCG00000573
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18489851 ~ 18530757 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtctgtgtgtctgtgagtgtgtgagtgtgtgtgcgagtgcCTGTGTGCGAgtgcctgtgtgagtgtgagtgtgagtgtgagtgtgtgtgtgtgtctgtgtgtgggtgtgtgtctgtgtggctgtgtgtgagtgtgtgggtgtgtgtgtgagtgtctgtgtgagtgtgtctgtgtgtgtgagtgtgtctgtgtgtgtgggtGTGTCTGTACATGAATCTCTTATGCGCAGATTCACCCGACTGCCAGACcagagagggaggaaagaaGGGAAGGAGACGGCAGTGTagcatatgtataaatatagagTTTTAATGGGGTATAgtgtttagaaaaataagttCACATCATTtcagaatacaaacaaacaaagacaattcAAGCTTAAAAAtcctattgttattattattattattattattatccgtACATCGCTTGCCTTTGGTATGACCAATTGAGCACACAAAAGTGTCACATGCTTAGTGTTCCACACCCCCAAGATTGTACGATCTtctgaaaaacagacagacaagtaTTTAAGGCACATATATCCAGGACGTACCGCCTCGGCTCACCATGCAAAGAGTAACAGAGATTTCCCTTCCctgcagaacacacacaaacggACACGCACACCTGGCCTCTTATTTACATGTGCTTGTACTGGACTGTgtagaaaacacaaatgaacaACTTGCTGAGACGTCAGCggaaaaaagattttaaaaatggggAGAATGCAGATCCGGTAGAGCAGTGATTATCCACCAGGGTGTCACGGCACATCGGCGCCACCGGACGTTTTGGACAATTAATTTCAAGTTTATGAAAGGGGAGAGGGGGCAGGTTGGGTTGGCGAAATTGTGAAGTGAATTATTTGTGCCTTGAGTCCTGAAGGTTTGGGAAACACTGTCATAGAGCAACTGCTGCCCAAACAAGCCGCTAAAGTCCACAGTCCACAGTCCTGCCAAGTTACATtcgaagtgtgtgtgtgtgtgcacgtgtgtgcgCGCGTGGGGGGGTGCAGGTCAGCCAGGGACAGCTCTGCACATTTCAAAGGCACATTTAAGTGCTACAAATCTCTTTGTAGTCTCctttataatgaaataatttcaCGAGGTGCCCGAGCACCGTAGCAGTTGTGTTGTGAGTAACAGTCAGCGACTCCCACTGAACCCACGCCTGCAGCAAAGTATGAGTATGTAATGCTTGCATACAGGTCAGGGGGTCTCTTGGCAAATCGTTTTTCTATCGACACTGCAATGCTTGATGTAGTGCAGATTACATTTCACTACAATTACTTCCATCGTGTTTTGACAGGGATTCTTTGTGGATAAGCTCCTGCCCTGTTGTTTTTGGACACAGTCAGAGGACAGCAGCGGCCCATCCTGGCCCAGACCTAGCTGACAGCGCCAGTCTCACCGGGGCAGACATCTCCCACTGCAGGCTGGCAAAGGACACAGAAGATCTCCCTTCCCAGCCCAGCCTTCCACCTAAGCTCAGCCCGGCCGCCCCCCGCTCTTGCCCCGGGTGTCTGtgcagtgggggtgggggcagcaACTCAGCTCAGCCCTGCCTCCCCTCCCCGGACTCTGCTCTCCCAGGTCTGCATCTGGTTTTGGGTGTGAGAGGAGCTCAGTGTAAACAGTAGGGAGGAGACTCTGGGCCACACTGAGGTGGTATTTACCCTGCCCTAATCCCGGGGCTAAAGCAGCACACATGGAAGCGAGCCCTCCTGTTGCCTGGCAGTGGGAGGCTTTCCCTGCCCTCCGACTCCGGAGGTCCGCACTGTGGGCCACAGAGGGCCGGGCTGCTGGGAAACGGGACGCCGCGGGCTGAGCCGCCGCGGAGCATGAAAGTCGAAGTGATCCCACCCTGCTGTCGACAACTCAGAGAGAAACTGCCAGTCTGCTGGAGGTCTTACacccacaaaacaaagcaaacaaaaatgtgggTTGATAATCTGCAAGCTAATTGCAAtcctttattaattaattgtggcAGAACACTGTTAATAGGTCATACTATTGACAGCATTGCTAAACACTACAAGTATGTTTGCAACAGACTTTGCTgggcattttcttttacatctgaaatgtatttgaatgaacATGATTAGAAAAGAATTAAACAGCTATACatgagtgtgtgtttattttaattttctaaatgttCAGCAGTCTAGATTCCCAGGGTCCCTCACTGCTgtgaacagaaacaaagaaaaacccGTAACTATTCTTACAAAAACACCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190136 lncRNA upstream 104805 18384600 ~ 18385046 (+) True G151052
TU190134 lncRNA upstream 129559 18359247 ~ 18360292 (+) True G151050
TU189989 lncRNA upstream 405164 18084460 ~ 18084687 (+) True G150953
TU189986 lncRNA upstream 408510 18078114 ~ 18081341 (+) True G150951
TU189942 lncRNA upstream 426505 17994559 ~ 18063346 (+) True G150913
TU190355 lncRNA downstream 328506 18859263 ~ 18859464 (+) True G151217
TU190357 lncRNA downstream 332267 18863024 ~ 18868044 (+) True G151219
TU190367 lncRNA downstream 389164 18919921 ~ 18921366 (+) True G151226
TU190511 lncRNA downstream 599868 19130625 ~ 19130890 (+) True G151310
TU190549 lncRNA downstream 774489 19305246 ~ 19307462 (+) True G151339
AMCG00000553 mRNA upstream 6645 18480371 ~ 18483206 (+) True AMCG00000553
AMCG00000552 mRNA upstream 56250 18428915 ~ 18433601 (+) True AMCG00000552
AMCG00000550 mRNA upstream 70275 18411443 ~ 18419576 (+) True AMCG00000550
AMCG00000551 mRNA upstream 85054 18392416 ~ 18404797 (+) True AMCG00000551
AMCG00000555 mRNA upstream 153404 18308336 ~ 18336447 (+) True AMCG00000555
AMCG00000572 mRNA downstream 3712 18534469 ~ 18549967 (+) False AMCG00000572
AMCG00000571 mRNA downstream 38408 18569165 ~ 18583738 (+) True AMCG00000571
AMCG00000579 mRNA downstream 71793 18602550 ~ 18606788 (+) True AMCG00000579
AMCG00000580 mRNA downstream 80150 18610907 ~ 18613346 (+) True AMCG00000580
AMCG00000581 mRNA downstream 91645 18622402 ~ 18623132 (+) True AMCG00000581
TU190161 other upstream 70380 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 330530 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 941343 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 1551569 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 4336011 14133138 ~ 14153840 (+) True AMCG00000412
TU190212 other downstream 11620 18542377 ~ 18565627 (+) True AMCG00000572
TU190785 other downstream 1438582 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 2311181 20841938 ~ 20843463 (+) True G151676

Expression Profile