RNA id: AMCG00000594


Basic Information

Item Value
RNA id AMCG00000594
length 9229
RNA type mRNA
GC content 0.65
exon number 49
gene id AMCG00000594
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18886448 ~ 18923025 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaagaaacagCGAGCGAGCAGAGTCTATTATCCTGGTGCTGTGGGAAGCTTCGCTGCTGCACAGTGCGTCTCATATTGCTGAGATCTGCCACACCGAGGTCTCTTTCATCTCCCTGCTGATTCACAGAGCCAGCAGCCGTTAGAAATCTTACCTCCAGACGGCGTGGGCATGCTTTCTGGCGTCCACGGATGACCTCTGGACTCGGCTTGCATTCTCCCGGGAAGCATGGCATCAGTAGGGTGCTCGGAGGTGGCCGAGGAGGAGCCGGGGTCCCTCCCTCTGGACATCGATGACGTCCACCTGCTGCTGCAAGTGGAGCAGGAACAGATCCAGAAGAGAACCTTCACCAACTGGATCAACGCTCAGCTCTCCAAGCGGCAGCCCCCCAGTGTGGTGCTGGACCTGTTCACAGACCTGAAGGACGGCGTGAGGCTGTTGGACCTCCTGGAGGTGTTGACGGGCCAGCCTATGAGccgagagaaggggagaggcgTCTTCCAGCAGAGGAGCAACCTCGAGACGGCCCTGAAGTTCCTGAGGAGGCGATCGATAAAGCTGGTCAACATCAACGTTCCTGACATTATCAATGGCAAGCCCTCCATCATACTGGGCCTGGTGTGGACGATCATATTACACTttcatATTGAGGAGCTGGCCAGCACCCTGGCGTTCAGCTCCCGCCAGTCCTCCATGGAGTCTCTGGCCAGCCTGGACTCGTGCTCCACTATCGGCAGCCCCCCGCCTAAGAGGAGCTCCCCCTCACCGCTGCACAGCCGCTTCAAGCTGTCCGCCAAGAAGGCCCTGCTGCTCTGGGTGCGAGAGCAGTGCGCCAAGAACGGCTGCAACATCACCGTGAAGGACTTCAAGTCCAGCTGGAGGTGCGGCCGGGCATTCCTGGCCATCCTCTGCTCCCTCCGGCCCGATCTGGTGGACCTGCAGGCCACCAAAAACAGAACCAACAGGCAGAACCTGGAGGAGGCGTTCCGCATTGCCGAGCAGCAGCTGCGGATCCCCCGGCTGCTGGAGCCAGAATACGTCGATGTCCGAGACCCGGACGAGAAGTCCATCATGACCTACGTGGCCCAGTTCCTGCAGTACTCCAAAGACCTGCCCCTGTCTGAGGAGGACCTACAGCTGCGGGGGTGCAAGACGGCCCTGGATCTGTCCCTGCCTCCCCCGCTGGACGGCGTGGGCTCCTGGCTGGTGCGCGTGGAGGCCGTGTTGGCGGACGGGGGCGGCGAGACGCAGGATCACGCCCGGGCGGCAGGGGACGCCAGAGAGAAGCTGCAGCTGCTTAAGTCCTTAATGGAGGACATGAACGCACACCTGCAGACGCTCCACACCTTCCAGAAGGGAGACGAGCATCAGGTCGCCCAGGTCCCGGCCGACAAGATGGACGAGGTCAAGAGAAGGTTCACCGGCGCCAGGGTCACGGCCAAGTACCATGGCATCAAACTGGAGTACCAGGAGTGGAGGCACGCCGTGCTGGCCCTGCTGGAGGAGGCCAATGGCAAGCTGCGCTCCTGGAGGGCCCCGTACGGCAGCCGGGAGGCCATGCGTCTGCGGCTTCAGGACTGGCAGCTCCGTTTAATCTCTGGCAAATACACCAGCAAGTCCGCTCTAGCGGCCGACTCGCAGCACATCGACAGGTTCGTGAAGGAGGCGGAGCGGGAGGGCGCGGCCGTGCGGGAGGCGGTTGAGGGGGCCCGGGCCTCTCTGGGGCGCGCACTCGCGGCCTGGGACTCCTTCTTTGAGCTCAGCAGCTCCCTGCAGGCCTGGCTGGCccactgcctccctccctcgctgGTGACAGCGGACAGCCTGTCTGAGTGGAGCGGCCGGCACGCCCAGCTGAACGAGCTTGGCGGCTTCCTGATCGAGGTCTCGGACAAGGAGACCTGCGCCGGGCTGGCGGAGGAGCTGTGCCGAGTCAACCGGCAGTGGGCTGACTTCGAGAAGAGGACGAGATTTGCCGTGGTGTCCCAGCCCACCAGCGACCCCGGGAGGCTGGAGAAGGCCCTGTCCGTGAAGGGACTCCTGGACGACACGTCCCGGCTGCTGCAGGAGCAGGTGGAGGTGTCGCCCAGCTCCCTCAGGACTTTCAGGAAGAGGCTAGAGttaaAGCAGAAGAAGATGACGGAGGTGGACGTTGACGCTCTCCTGCGACAGGAGGGCTCCCCAGAGATGGTGGAGGGACTCCAACATGCCCTGACTGAGGTGTGCGGGCAGCTGGCCGAGGCCATGCGGGGGTTCGAGGAGCTGCAGCAGGGAGTGGTGGGGCTGGAGAGCGGACTGGCGGAGCTGCGGCACTGGGACGGCCAGGCACGGGATGTCCACAGCACCCTGAGGACCAGGGGGCAGCACCCTGGCCAGGACCCGGCCGTGCAGCGGTTGGTGTCCCGGGGTCTGGAGCTGCAGAGGCAGGTGGTGGCCAAGGAGCAGGCCCTCCTGGCCGCGGTGGAAACCCTGCAGAAGAACGAATCTCTCCCGTGCCTCAGCGTGGCAGGACTGCAGGGCCGAGTCAGGGCAGCTACGGCCAGGGCACAGGAGGCCCTGGCCTTGTTGAGCTCACTGGGACAGAGGGAGGAGCCGGGGCCAGCCAGGGTCCAGCCGCCCGTGCCAGCAGAGGTTAAAGTGCAGGGGCCAGCGGAGGTGAAGGAGGTCCGGGTCAGCCAGCAGGGGTCAGCGGAGGTGAAGGAGGTCCGGGTCAGCCAGCAGGGGTCAGCGGAGGTGAAGGAGGTCTGGCTCAGCCAGCAGGGGCCAGCGGAGGCGGAGGTCAGGCAAGGCTTCAACCGGTCCAGGCAGCGTCTGCTGGAGTACATCGCTGCTGCCGTCTCGGTCCTGAGCGCCAGGCAGGACACCGCGGAGCAGGCGGCCCGAGCCGAGGAGGTCTTACGGAGCCCCGACGCCAAGGTCCTGGAGGACTTTCTGGCTTCGGCCAAGCAGATGAAGCGCTTCTGCCCCCCGGAGCAGCGGGAAGAGGTGGATGcgatcagtcagtcagtcctgACGCAGTGGGAGGGCTGCTTCTCCTCGTCTGGCCAAGCTGGGCGGCAGGCGGAGGCGCCGAGAGAGACCTGCGCGCCCCCGAGCACGGACCGGGCTCACGGGGTGACCAGGGCCCAGGTCAGGGAGCGCGACCAGAGGCCAGAGCGCATCGAGAGGCGGGGCGGGAAGCTGCATGCCAATCTCTCCACCGCAGCGAGACGCCCCCTGGAGGCTGGCGACGGGACGGCACAGTCAGCTGCGATGCCGGTCCAGACAGATCCTGCTCTCAGCTTAGCGGCCACACAGGCCGTCGTGACGGGGGGGAACGTGGAGGTGATGCAGAGGGCCGAGAGGATGGTCATTGCCGGGAGCCCCACAGACGGCCTGCGGGAGGGGCAGGACCAGGACGGGCAGGAGGCGGAGGGCAGATACAGAGAAGCCAGGAGCGCATTTGAGCTGCAGCTGCGCAGGAACGCTCAGTGTCTGCAGACCGGGTTTCCTGCTGGCGATGCCAGCTTCTCCGTCCTGCAGAGCAAGAGCCAGGAGCTGCAGGCACTGAGGCAGGACACCGAGCCGCTGTGGTTTGAGTTCGAGCTTCAGGCCTCCCAGGTGAAGCAGGACGCCGGAGCAGAGCCGGGCCACGGTGTGCATGAGGTCCGGGCAGCTCTGACTCAGGAGTGGAGAGCACAGAAGCTCCAGCTGCAGGCCAGGCTGAAGTCCATCGGGGTGGCTCTGGAGATGACCGGTCCTGTGGAGAGACAGACCTCTCACCTCGCTGCTCTACTCAGCCAGATCCAGCAGAAACCCCGGGAGGTCGGCGGCTTCGCGCTGGTGGATGGAGACTCTATTCAGAGCGATTTCAAGGACCTGCAGGAGGGCCTCCGCTGTGAACTGGAGAAGGTTGGTGCTCTGGAGAGGGCGGCTGGTGCAACCGGGTCTGAGCTGCTGCCGAACGAGCGCCAGGTGGTGGGCGCCATGAGTCGGGACTGCCGGACGCGCCTGGAGGAGCTGCAGCGGGGTGTGCGGGATAGCCAGGCTGCCCTGCAGGGGCTGGAGCGCCTCCTCACCTCCCTGCGCAGAGCCGAGCAGGACCTGGACGAGGCCCGGTCCGCGCCTGCCGGGGACGTGGTGGCCGTGAGCGAAGCCAAGGCCAGGCTGGAGCTGGTGGGCCAGAGCGTGGGTAGCCTTGGGGACCGGGCAGAGCGGACGGACGGGCTGCTGGCCGCGGCACGGCTTTCCCTCGGTGGCCGGGAGGGACTCTCCTGTCTGGGCCTGGTCTCTGCGCTCGCCAGCAGGGTGGGGGAGGAGGCGGAGATACTCGGGCAGCGGCAACGGAGCCTGCAGTCAGACAGGGAGCGGCGCAGCCTCCTGCAGGGGAAGAAGGCGCTGATCTGGGGACTGCAAGAGCTCCGGCAGAAGGTCGACAGCCTGACCCTGAAGGAGGCCACGCTGCCCGCGCTGCAGCAGAGGCTGCGGGCCCTGAGGGACCTGGAGTGCCAGATGGACGGTCTCCGAGCTGAGCTGCAGCGCCTCAGAGATGCCGCGGGCCGCATCCCAGCACAGAGTCCGACCCCAACTCCCTCCCGGCCCGGAGAGCAGGGGATTCTGGGGGACCTGGAGACCGAGTGGGAGGAGACGCAGAGGACCATGACtggaggGCTGGAGCAGTGCCTGGCGCTGGTGGAGCTGCTGAAGAAGTTCCAGGGCTGCCGGGGGGAGCTGTGCAACGCATTGCAGAGAGCCGAGCACACCGCCGCGGAGCAGGCCTCTTACATGGGCAAGGACAACCTGCAGAGACTCATTGCCAAGGCCAGCGAGACGAAGGAGGAGCTGGGGGGCTGCGCCGAGGCCGTGGAGCAGACGCGGGGGGTGTGCCGGCAGCTGCAGGCCCAGCTCCGGAGGATCCCCGGCTGGGCAGAGGCGCCGTTCGAGTCCGAGGCTGACAGCCTGGTGGACCGCTGGCTGGACGTGATGGAGAAGGTGGACGCTCGGCTGGACAGCCTGCGCCGCGGCCTGGCGCTGTGGGACAAGCTGCTGAGCCTGGCGGCCGAGGTGGAGGAGTGGACGGGTCGCACCCTGGCCGTGTTCGCCGGGGGCCACTCCTTCCGGGACGAGCAGGAGCTCACAGAGCTGCAGGATGAAATACGAGCCCAGGAGGAGAAGGTTGAACGTTTTCACAGCAAGTCGGACGAAATCCAGAACCTTTTGCAGAGCGCTGAGTCTCCTTTAGAGCTGCAGGTGGTCGAGACCCAGCTGAGGAAGAGGATGGGGCAGGTGAAGGAGGTGGCCGCGGAGAGCGCCGACATGTTCCAGCAGCTGGCGGCGGTGAAGACGCACATCGCGGACAAGCTGGCCCAGTGCTGCTCCGACCTGCGGGCCACAGAGGCCAAAGTGAGCGGCCTGCCCGAGCCCAACAGCCCACACAGCCTGGACCAGATACAGGTGCAGGAGGAGCAGGCGGACGCACTGTTGGTGGAGATCACCGCCGTGGCGAGGGTGGTGAGTCCCCAGGCCCTGCAGACACTGGCTGCCGAGGGCATCCAGCTGAAGGAGGGTCTGCAGAGGGCGAAGGAGGTGCTGGAGCAGAGGAGGCGCCTGGCGGAGAGCGGCTGCCTGCGGCTGATTGGCGACGAGTGCCAGGCCTTCGAGCGCTGGCTCCAGGAGCTGCAGATGTCCGTCAACGAGTGCTTCGAGAACCCCGAGCGCCGGCAGGACGTGGAGGGCTCTCTGAACCGGCTCACCGAGGTCCTGGCCAgtgaggagggagagaagaggcTCTCCCAGCTGAAGGCACGTCTCTCTGCGGCTGGAGAGCAGCTGCCCCGCGCCCAGGCCGGCCCGCTCGACGCCTGGCTCCGGGAGCAGGAGAGCGAGCTGGACACCTTCCGCAATCACTGCCGCCACAAGCACGTCCAGCTGGACTCCTGCCTCCGAGAGCTGGACAGGCTGGGTGAGGAGCACCGACGGCTGGACGAGTGGCTGACAAGCAGGGAAGGGCAGCCGGCCGCAGGCGAGGAGCTGCACCACCTGTATGAGGAAGTCCTGGAACAGAGGCAGAGGTTTGAGGCCTGCCGAGCCCTGGTGCTGTCAGTGAGGAGGCAGGGCCTGAGGTCCGACCGCGCGGTGCAGGAGAGCGAGGGGCTGCAAGAGCGGTACCGGGCCCTGCAGGCGCGGCTCGGCGGGCAGACCGAGGCCCTGGACGCCCTGAATGCAGAGGCCCGGGCCTTCTCCGCGCTGGAGGAGAGCGTGCTGGACTGGGTCTCCCGGCTGCAGGACGAGCTGATGTCCCTGGGCCCGGATGCCCGCGGCAGCAGGGCGGAGCTGGAGGAGCGGCTGCGCAGAGCTGAAGCGGTCCTGCACTCCAGAGCAGAAGGGGACGCCAAGATCCAGCTCTTGAGGCAGAGTGGGCAGAAGCTGGCGGAGCAGGCGCAGCTTGATGACATCATGAGGGCGCGGAGTCAGGAGGCGCTGAGGGCCGCGGAGGAGCGGTGGGGTGCGGTGGTGCGGGCGGCCAAGGAGCTCTGCAGGCTCCTGCGGGGCGTGCTGGATCGCTGGACTGCCTGTCTGCAGGCCGGGCAGCTGGTCAGTTCCAGAGCTGACGAGCTCCAGCGCCGGGCAGCGGGACTTCCTCAGCTCTTCCCCTGGCCTGGACTGGCGGAGAGGCAGCGGGCCCTGGAGAGCGGCGGGGTGCTGGCGGAGGAGGCCGGGGCCCTGACCCAGTCCTGCGATGCTTTCTGGGCCCAGAGGGAGGAGCTGTTCCAGATCACACGCGACGCTGGCTTCACCGGGGCCTCTTGGGCCGACCTGGCCGAGCGCACGGCCGGCCTGCAGAAAGATCTGGCGGGCGCGTGCCAGAGGCTTCGGGAGAGCGTGGCAGCAGAGCAGCGCTGTGCTGAGCTGCTGGAGGAGGCTGGAGCTGCCCAGCACTCCCTGCAGTCACAGCTACAGGCAGTCAGAGCCGGGCCCAGGGACCTGGCCAGCCTGCAGCGCGGCATCGACACCCTGCAGgccCTGCTCCAGTCCACCACCCGTGGCGCCGCCGTGCTGAGCGAGCTGGAGTCCCTGAGCGCCTCCCTGCGGGGCAGCAGCTCCCCCAGCGGCCAGGCGGAGGTGGATCGGGCGCTCGGCATCCTGTGGGAGCAGCACAGGGCGGTGGAGAGGGACCTGCGgcagagtgagtgtgagagccCGGTCGCACTGAGGGAAGCGATCGAGCAGCAGGACCGAAGAGGCCGGGAGCTGAGAGAGGAAGCGTGCAGGATCGTGGAGCGGCTAGGGACGGTGTGCCGAGGCCTGGGCCCGGTGCCGGAGGGGCTCCCCGCCCTGCCTGagctgcagcagcagtgggAGACCCTGAAGGGCTGTGAGGCAGTACTGGGAGAACTGGGGGTGCGAGTGGCGGGGCTGCAGGCCGCAGTGGGGGTCAGCGGTCCCGGGGAGGAGATCCCACCAGACGTCGCCACAGCCGTGTCCGCAGCAGACCGGGAGCTCAGCAGAGTGAGGGCGGAGGTCACGGACAGGCAGTGCGTTTGTAAAGCAGCCGTCGCCCGCCGGTTGAGTGGGTCGGTGCAGGACTTGAAGCAGTGGAATCGGGCGGCTGAGTCACGCCTGACTGTGCCGGGCCGGCCGCCCACGGAGCCCCTGTCCCTCGACACACCACGTCAACAGGCCGTGCTGGCTGAGGGCGAGAGGCTGCGCAGGGCCCTGCAGGAAAACCTGGCGGCCCACGGGCTGCTGTCGGACTCGCTGGGTCCGGAGGAAAAGGACCGGCTGGACTCGGAGGCGGCGCACGCCCTGAGGCTGGAGGGGACTGTCACCGCCGCCCTGGCCCGGCAGCTGCAGGCGTGTCAGGAGGTGAAGCCCAAGACTAAGAGAATAGAGACGAGAAGCCCTGGGACACAGGGTCCTGGGACACTGGAGACACGACGCACTGATACACTGTCCTCTGATGCACAGCACACCGAGAGAGGGCAGGTCCAGGGTGCTGCCACACAACCTATTAAGAAACAGCGCACTGAGAGCATGGAGGCGCCGCCTACCGACGCACAGCACAATGAGAGAGCAGAGACAAGACGCACTGATACACAGCCCACTAGTACACAATGCAGTGATACGcagcacagagaaacacagcacaCTGGTACACAGCACACTGAGAGACGGGagacacagcacactgacactctgGCTACTGATCTAATGCACActgagagaggggagagacagagcactgacacacaacacactgagaGTAGTGAAACCCAGCGCACGGAGAGACCAGAGGggctgcacactgacacacagctcaCTGACACACCGGCCCATGAGAACGGCGAGACCCAGAGCCCTGATAAACACCAGACTGAGAGACTGGACATACAGATCATTGACACACTGTCCACGGACACACAGCGCACTGAGGCAGCGCACACCGACAGACTGGACAGACAAGTATCTGGTACACAGCGCAGTGATACACAGAGCAGTGATACacaacacattcaaacacagaGAATTCATACACATCCCACGGGTACACATCGCACTGCTACACAATGCCTTGATACAAAGGCCACTGGTACACAGCGCACTGAAACGCAGCCCACTGACGCACAACGCATTGATACACAGCCCATGAGTAAACAGCACAGtattacacaacacaatgtaaCACAGCGCAGTGATACACAGCCCATTGGTACACAGCACATTCATAAAAAGCCCACTGACAAACAGCACACTGATAGACAGCCCGCTACTACTACACAGCGCATTGTAACACAGTGCAGTGATAAACAGCCCACTGATGCACAGTCCACAGGTATACATCGCACTACTACACAACGCATTGATACACAGCATACTACTACACAGCACAGTGCTACAGAACACATTGAAACACAGTACAGTGATACAGAGAGCAGTGATGCACAGCACACTGAGGTCAAGAGGATACCAGACACTGGGACGCGACTCAATGAGGCCCAGCTCACTGACAGACCGCAGGATGAGACGCCACAGACTAAGACAACGGGCACTGCCGTCGCCGGGGCACTGCACTCCGAAACCATCGTGCCAAGGCACCCTGAGCACGCCGAGATGCAGCAGCACGAGCCCCGGGGCGCAGAGCAGACGGAGGGAGGGGAGGTGCAGCACGAGGACACAGAGAAGGTAACGCTGTGTTCCCAAGACATCTGTCTGGGCGAGATTCAGCTCAACTGGGGGGATGTATTCCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190357 lncRNA upstream 18404 18863024 ~ 18868044 (+) True G151219
TU190355 lncRNA upstream 26984 18859263 ~ 18859464 (+) True G151217
TU190202 lncRNA upstream 355691 18489851 ~ 18530757 (+) True AMCG00000573
TU190136 lncRNA upstream 501402 18384600 ~ 18385046 (+) True G151052
TU190134 lncRNA upstream 526156 18359247 ~ 18360292 (+) True G151050
TU190511 lncRNA downstream 207600 19130625 ~ 19130890 (+) True G151310
TU190549 lncRNA downstream 382221 19305246 ~ 19307462 (+) True G151339
TU190812 lncRNA downstream 1126391 20049416 ~ 20049648 (+) True G151535
TU190815 lncRNA downstream 1193473 20116498 ~ 20116788 (+) True G151538
TU190817 lncRNA downstream 1230090 20153115 ~ 20153540 (+) True G151540
AMCG00000587 mRNA upstream 61770 18808614 ~ 18824678 (+) True AMCG00000587
AMCG00000569 mRNA upstream 196353 18678797 ~ 18690095 (+) True AMCG00000569
AMCG00000568 mRNA upstream 208334 18660117 ~ 18678114 (+) True AMCG00000568
AMCG00000578 mRNA upstream 227511 18654633 ~ 18658937 (+) True AMCG00000578
AMCG00000577 mRNA upstream 233930 18636125 ~ 18652518 (+) True AMCG00000577
AMCG00000596 mRNA downstream 5641 18928666 ~ 18947466 (+) True AMCG00000596
AMCG00000595 mRNA downstream 27133 18950158 ~ 18991317 (+) True AMCG00000595
AMCG00000593 mRNA downstream 364148 19287173 ~ 19289424 (+) True AMCG00000593
AMCG00000605 mRNA downstream 459907 19382932 ~ 19387617 (+) True AMCG00000605
AMCG00000604 mRNA downstream 468749 19391774 ~ 19409778 (+) True AMCG00000604
TU190212 other upstream 320821 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 466977 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 727127 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 1337940 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 1948166 16935993 ~ 16938282 (+) True G150750
TU190785 other downstream 1046314 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 1918913 20841938 ~ 20843463 (+) True G151676

Expression Profile