RNA id: AMCG00000612


Basic Information

Item Value
RNA id AMCG00000612
length 879
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00000612
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19539551 ~ 19542191 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGACACGAAACGCCAGACTGGAGCAGCTACTACAGTGACGCACAAGAGGTTTATTCCGCGGTCCCCAATGGCAGCATGAACGCGGGCCTGGGGGCGATGAACTCTATGAACGGCTACATGGGCAGCATGTCCACCAGTGGCAACATGACTTCCAGTTCCTTCAACATGTCCTATGCAAACCCCGGGCTGGGAGCCGGGCTGAGCCCCGGCACCATGGCGGGGATGCCCCCCAGCGCGACCAGCGCCATGAACGGCATGCCAACCGGGGTCTCGGGCATGGGCACCGCTCTTAGCCCCACCAACATGAACGCCATGCAGAAACGGTTTAAATGCGAGAAGAGGCTGTCCGGGGGAAAGGGCTCTCAGGACAGCCGCAAAGACCAGTCTGGTGGTCCCGGCTCGCCCCCCAACGAGGGCAGTAGCGGGAAAGCGGGCCAGATGGACTCCAGCTCCAACCAGTCCTCCAGCCCTCCCCGCATGGACCACGGCGGCGGCACGACCGCCAGCGAGCTGAAGGGCAGCGGGGCGCCGGTCCACCCCGCGGTCAGCTCGGCCACGGCCCTGGCGTCCGCCCCCCTGGCCCCCCACCCCATGTCCCACGAGCCCCCGCTGCACCTGAAGGGGGACCCCCACTACTCCTTCAACCACCCGTTTTCCATCAACAACCTCATGTCCTCCTCGGAGCAGCAGCACAAGCTGGACTTGAAAGCCTACGAGCAAGCCTTACAGTACTCCTCCTACGGGCCGGGGATCTCGGCCAGCCTGCCGCTGGGCAGCGCCTCCATGGCCGGGAGAGCCACCATGGACCCGTCGGCACTAGAGGCGTCTTACTACCAAGGTGTGTATTCGAGACCTGTGCTTAACACGTCTTAG

Function

GO: NA

KEGG:

id description
K09387 FOXA1, HNF3A; forkhead box protein A1, hepatocyte nuclear factor 3-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190549 lncRNA upstream 232089 19305246 ~ 19307462 (+) True G151339
TU190511 lncRNA upstream 408661 19130625 ~ 19130890 (+) True G151310
TU190367 lncRNA upstream 618185 18919921 ~ 18921366 (+) True G151226
TU190357 lncRNA upstream 671507 18863024 ~ 18868044 (+) True G151219
TU190355 lncRNA upstream 680087 18859263 ~ 18859464 (+) True G151217
TU190812 lncRNA downstream 507225 20049416 ~ 20049648 (+) True G151535
TU190815 lncRNA downstream 574307 20116498 ~ 20116788 (+) True G151538
TU190817 lncRNA downstream 610924 20153115 ~ 20153540 (+) True G151540
TU190834 lncRNA downstream 996881 20539072 ~ 20540211 (+) False G151557
TU190835 lncRNA downstream 996881 20539072 ~ 20602476 (+) True G151557
AMCG00000610 mRNA upstream 69249 19467467 ~ 19470302 (+) True AMCG00000610
AMCG00000606 mRNA upstream 94842 19419788 ~ 19444709 (+) True AMCG00000606
AMCG00000604 mRNA upstream 129773 19391774 ~ 19409778 (+) True AMCG00000604
AMCG00000605 mRNA upstream 151934 19382932 ~ 19387617 (+) True AMCG00000605
AMCG00000593 mRNA upstream 250127 19287173 ~ 19289424 (+) True AMCG00000593
AMCG00000617 mRNA downstream 67839 19610030 ~ 19614880 (+) True AMCG00000617
AMCG00000616 mRNA downstream 82228 19624419 ~ 19643345 (+) True AMCG00000616
AMCG00000620 mRNA downstream 122370 19664561 ~ 19673895 (+) True AMCG00000620
AMCG00000614 mRNA downstream 254593 19796784 ~ 19805199 (+) True AMCG00000614
AMCG00000621 mRNA downstream 389777 19931968 ~ 19967663 (+) True AMCG00000621
TU190212 other upstream 973924 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 1120080 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 1380230 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 1991043 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 2601269 16935993 ~ 16938282 (+) True G150750
TU190785 other downstream 427148 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 1299747 20841938 ~ 20843463 (+) True G151676

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022481 True 1891 mRNA 0.50 2 NC_007128.7 10318071 ~ 10320932 (+)