RNA id: AMCG00000641


Basic Information

Item Value
RNA id AMCG00000641
length 822
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00000641
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21238713 ~ 21239930 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttggACATGGGAGAACGAAAAGAAGTGAAAATGATTCCCAAATCGTCGTTCAGTATAAACAGCCTGGTGCCCGAAGCCGTGCAAAGTGACAACCAGCACCGAGCCGAGGACGAGGAGAGCCACCCGGTTCCCGAGCCCGGGCAGGACCCCAAGTCCGAGAGCTGCAAGAGTGAGCACAGCTCCCCCGAGTCGGGAGCCAAGCTGGCCTTCAAACGCGGGGCGCGGCTGACGTCCACCGGGCTGACGTTCATGGACAGGGCTGGGTCCCTTTACTGGCCCATGTCCCCCTTCCTGTCCCTGCACCACCCCCGGGCCAGCAGCGCGCTGGGCTACAATGGCACCGCCTCGGCGTACCCCAGCCACCCCATGTCCTATAGCTCCGTGTTGACTCAGAACAGTCTGGGGAACAACCACTCCTTCCCCGCGTCCAATGGCTTGAGTGTGGACAGACTGGTGAACGGGGACATTCCTTACGCCACCCACCACCTCACGGCCGCGGCCTTGGCTGCCTCGGTGCCCTGTGGCCTCTCGGTGCCCTGCTCGGGCACGTACTCCTTGAACCCGTGTTCGGTGAACCTTTTAGCAGGACAGACCAGTTACTTCTTCCCTCACGTCCCCCACCCGTCAATGACTTCTCAGAGCAGCACGTCCATGACGGCCCGGGCCGCCTCGTCCTCCTCCCCGCAGGCGCCGTCCAGCCTCCCCTGTGAGTCCCTTAGACCCTCTCTGCCAAGTTTCACGACGGGACTTTCCGGAGGACTGTCCGACTACTTCACACATCAAAACCAGGGCTCTACTTCAAACCCACTTATACACTAA

Function

GO:

id name namespace
GO:0043584 nose development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030182 neuron differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09385 FOXG; forkhead box protein G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191062 lncRNA upstream 97253 21141186 ~ 21141460 (+) True G151752
TU191011 lncRNA upstream 319313 20918699 ~ 20919400 (+) True G151709
TU191010 lncRNA upstream 320175 20917942 ~ 20918538 (+) True G151708
TU191008 lncRNA upstream 320843 20917150 ~ 20917870 (+) True G151706
TU191004 lncRNA upstream 368302 20870184 ~ 20870411 (+) True G151702
TU191091 lncRNA downstream 247802 21487732 ~ 21529378 (+) False G151775
TU191092 lncRNA downstream 287660 21527590 ~ 21567174 (+) False G151775
TU191097 lncRNA downstream 289468 21529398 ~ 21533538 (+) True AMCG00000661
TU191101 lncRNA downstream 296301 21536231 ~ 21542398 (+) True G151782
TU191090 lncRNA downstream 318920 21558850 ~ 21567174 (+) True G151775
AMCG00000654 mRNA upstream 317316 20920718 ~ 20921397 (+) True AMCG00000654
AMCG00000650 mRNA upstream 321568 20879319 ~ 20917145 (+) True AMCG00000650
AMCG00000642 mRNA upstream 368975 20855091 ~ 20869738 (+) True AMCG00000642
AMCG00000643 mRNA upstream 400433 20836579 ~ 20838280 (+) True AMCG00000643
AMCG00000648 mRNA upstream 428687 20809157 ~ 20810026 (+) True AMCG00000648
AMCG00000649 mRNA downstream 229913 21469843 ~ 21477418 (+) True AMCG00000649
AMCG00000657 mRNA downstream 237989 21477919 ~ 21507190 (+) True AMCG00000657
AMCG00000658 mRNA downstream 269444 21509374 ~ 21514322 (+) True AMCG00000658
AMCG00000659 mRNA downstream 276712 21516642 ~ 21526478 (+) True AMCG00000659
AMCG00000661 mRNA downstream 286940 21526870 ~ 21530529 (+) False AMCG00000661
TU190974 other upstream 395250 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 1266698 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2673086 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 2819242 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 3079392 18153864 ~ 18159321 (+) True G150976

Expression Profile