RNA id: AMCG00000649


Basic Information

Item Value
RNA id AMCG00000649
length 3994
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00000649
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21469843 ~ 21477418 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCGTCCTGTGAGTGCTGTCCGCCCGGCCTCCACTGTTGTTAGCGCTCAGGCTGCACCAGAGGATTTAAAGCGGTTTTGTGTGCTGGATTGTGCAGCTGTTCTGTCCAATACTCCTCTTTGTTGAAGGTAGAACCGAGAAGCGTGCATGTAGCTTGTTAAAATGCAGTCGCCTTCCATGCATTGtgccttatttatttactgggaGATGATGTAGTTATTGAGACCATAAAGTTACTGCTATAAAGAACGCTAGATATTGAGTAGGTGTGTCAGACTCCTTTCAGATGACACGAGAAGTGACTTGAACATGGAGAGAAGCAAAAGTAAGAAGGGCGAGGAAAAGCAAGAGGTCTGTGTTTTTTGCAAGCTCCCTGACAACTGCCCGGACAAGTATGGGGAGAAGATTGTCTCCAAGACTCACAGCCTCACTCTGCACTATTTCTGCCTGTTGATGTCAAGTGGCGTTTACCAGCGCGGGGAAGAAGACGAAGGGATCTATGGGTTTCTGGTGGAAGATGTAAGAAAGGAGATGGAAAGATCATCGAAGCTGAGATGCGGTGTCTGCAAGAAGAACGGCGCCTCCGTCGGGTGTTCGGTCAAAGCCTGCAGTAAGAAGGTCCACTTCCCCTGTGGGCAGCAGAAGGGCTTCCTCTTCCAGTTCACAGGCCTGTTTCCGTCCTTCTGCTTGGCCCACCGGCCCACGCAGACCGCGGCCGACTCGTCCAGACTGAGCGGACCCTTCTCCTGCTCCGTGTGCCTGGACCTGCTGGAGCCCGTGCTGTCCTACAGCGTGCTGAAGTGTCCCTGCTGCAACAGTAGCTGGTTTCACCGGGACTGTGTGCAGAACCAGGCCCACAGTGCCGGGATGTTCTTCTTCCGATGCACCATCTGCAACAACAAGGACAAGTTCCAGCAGGAGATGCTGCGCATGGGCATCCACATCCCGGAGAAAGACGCTTCCTGGGAACTGGAGGAAAATGCGTACAGCGAGTTACTGCAGGTCTACCAGCACTGCGATGTGAAGAAGTGCTGCTGTCGCCGCGGACGGGGCTTCAGCCAGCCTGACAGCAAGTGGGAGATCGTGCTGTGCCAGTACTGCGGCTCGAGCGGGACGCACCGGAGCTGCTCCTCTCTGCGCGGCCTGGCGGAGGAGTGGGTGTGTCCAGAGTGCCGGATCATCCTCAACGAGACCGGCTCTTTATCCCGAAACATTCACTCGATGTGTCCCCCGTCTGTCACAAAAGAAACCAACAAACCGCGTGTGAAACGCCACCACCCGTCCTCTCGCTTTTCCCCGGTGGTGTTGAAGAGGCAGTCGCTGCCGGCCAGGTCCTCCGCCGTGATGTTGAGGGAGCTGGCGGCCCAGGTCATACAGTTCGAGCACACGAGGGTGTTCATCAGGGGCAGCAGCGTGTTCGACGCAGCGCTGCTCGCTGTGCGGAAGAGGAACTTCTCGCCGCGCCACGCTGTCACGGTCTTCTTCAACAAGATCCGCAAAGAGCAGGTCAGCGTGAACCACGGGAATCGGCGCAAGTTCCTGCGTCTCCTCGTCCACTACTTACAGAACTGCGCCATGTTCGAGGGCTTCCCACACGCCAGGAACCTGACGCTGGACTCTCAAGCCCTGAGCGAGGATCTGTACTTCGAAGCCGGGCGATTGATCGCTCTGTCTCTGGTGCACGGTGGTCCTCCTCCCGCCTGCTTCTCCAGAGTGCTCTACCACTGCCTGCTGGACGACTTCCCAGGCATCCAGCTGTGCGTGGAAGACCTGGGGGACGTCCTCTTCGCAGGACACGTGACCAGGATCAAGGAGGCCCAGTCCGTTGACGAGCTGCAGGTGGGGATGTGTGCGGCCGTGGAGATGCTACCGGTGCCCGGGTATTTGAGACCAGTAAGCAGGCTGTGTGACAAGGAGCTGGTGGTCCAGGACCTCCTGAACTTCTACTTGATCACTAGACTGCAGATGCCTCTTCAGAGATTTCGCGAAGGGTTGAAAACACTCGGAGTCTTGGACCAAATCCAGAAGTTCCCAGAGGTGTTCTCTCCGGTGTTCTGCGGCAGACCTGAGAAACTCACGGCCGAGAAGATGGGTGACCTTTTCACGGTCCACTACTCGTCTGATGAGAACAGGGTGACGGTGGAGATGACAGTGGTTGAGTTTTGGAGACAATACCTGCAGGACTGTGAAGatGGGAATTGCGCCTCCTCCCTGGAGATGATTCTCATCTTCGCTACTTCGGCTGACACGGTGCCGGCCATCGGCTTCACGCCTGAACCGTGTGTGGAGTTCATACATGAACAACCCCAGTCCCAAGGAATGTACCCGGAAGCCAACCCCTCCTTCAACTGTATCTTGTTGCCCGTGGTCTCATGCTATGATGTTTTCAGGAGGAACATGGACTACGCCATCTGCCAGGATAACTGCAACCAGTTTGCTGAATAGTGCTGAgagttttttatttagtttcttccctgctttgctgtgttttttcaaGACCAGATCATGGAGTAGAAAACGTGActcatttatcaaaacaggagTGCAGGATTCACACTACGATCTGAAGACTGGTGTCTGTTTCTGACTGTATCAGACGGGTGTCACAGCCTGGGTCCGGTCTGGGTGAAGCTGGCCGAGGTGACTTTGCTCCTGAAGGACTCGGTGGTGTAAACGCAACGCCATGCTGACCACCCAGTCTTCAAGCCCATCCTGTTCTCCTGCAGTTTCCGGTTTGAGGGCGTGCCGTTTACCTCCTGGTCCCAGTACAGTCCTGGTCCCATGACTGCTTCGATGGAGGAGTgcaactataaaaataaatactaaaactaGTGGTAATGATCCTTGTACCTGAAACAGCTCAGTGCTCATGAAGGAGGGACCCTCATTGATGTGATTGTACTAAAGCTTCAGACCTGAGGACTTTCTGTATCTCACTCACTTCTCATCACTCGCTCTTAAGTTACATGTACAATATTCACGTTCACGGGTGTATCATGTTTGTGCATAAAGTTTGATAGATATGTATATGACACACAGGTTTCACGCAAGAATAAAAACTTTGGCTGTTCGTGTTCAAGCGACGCACACAGACTCACAACACCACGACaactgtgattaaaaaaactacaCCAATGATCTGAACACGCCTCTCACCCTGTGTCATATGGTCCCTCTCGCTCCCGGCCAGGCGTGTTCGCAGGTCTGGATACCGCAGAGACGCAAAGCATTAGACTGCCTCTGCATTATATacctgttttgtttcatgtttttaagtgACTGTATATATCGACGCTTCTGACTGTAAATAATTGTACTCGTCTGTTGTGGGTCGGACTTTACAGTTCTGGATAAGTGTTACGGTCCTTTCTTCATGTGTAGCGGTGTCAACGTGTGTAAAGTGTTTTactcttctttctctttctgttctttgtttttgtattaaaggCTCTTCATGAAAGCAGAGAGATGTTTGCTTCGAAAAATCGAAAAGCAAGACATTTCAAAATCTCTGTGAATTCCAATCTGAATTCGCTTGCAGTGTTCAAAAGTGtccttttaataattttggATTTTGTCCCTAAAAATGCTCCTGTTAATCCAGTAAAAACCCAATTGTAAATCACCGTggataaagaaatataataatatgaggATTAGTTTGCTCATTAGTTACTCAAGAAGGAATGAAAAATCCCAAAAGCCTGTTATTTCTATGTGTAATAGTGACTAATGTCTTTAAATTAGTATTGGCACCCTTTGTATCTGATGTGTTTGAAGAATAAAACATCCACAGGTTTCATCCACCTGGTGTTCAGTAGTGTGGTATGCAGTCGTGCATGTAGGTTGCAATCAGTGTTAGTGTATCAGTGTTAAATAGTGCGTTATGAGTAAAGAAACGCACAGACCAGGGATGCAGTGGTGACATCATAGGCGGATATACTACACGGACCAATGAAAAGGCTGCATCAGTTCAGTATCCTACGACACTTTc

Function

GO: NA

KEGG:

id description
K22371 G2H3; G2/M phase-specific E3 ubiquitin-protein ligase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191062 lncRNA upstream 328383 21141186 ~ 21141460 (+) True G151752
TU191011 lncRNA upstream 550443 20918699 ~ 20919400 (+) True G151709
TU191010 lncRNA upstream 551305 20917942 ~ 20918538 (+) True G151708
TU191008 lncRNA upstream 551973 20917150 ~ 20917870 (+) True G151706
TU191004 lncRNA upstream 599432 20870184 ~ 20870411 (+) True G151702
TU191091 lncRNA downstream 10314 21487732 ~ 21529378 (+) False G151775
TU191092 lncRNA downstream 50172 21527590 ~ 21567174 (+) False G151775
TU191097 lncRNA downstream 51980 21529398 ~ 21533538 (+) True AMCG00000661
TU191101 lncRNA downstream 58813 21536231 ~ 21542398 (+) True G151782
TU191090 lncRNA downstream 81432 21558850 ~ 21567174 (+) True G151775
AMCG00000641 mRNA upstream 229913 21238713 ~ 21239930 (+) True AMCG00000641
AMCG00000654 mRNA upstream 548446 20920718 ~ 20921397 (+) True AMCG00000654
AMCG00000650 mRNA upstream 552698 20879319 ~ 20917145 (+) True AMCG00000650
AMCG00000642 mRNA upstream 600105 20855091 ~ 20869738 (+) True AMCG00000642
AMCG00000643 mRNA upstream 631563 20836579 ~ 20838280 (+) True AMCG00000643
AMCG00000657 mRNA downstream 501 21477919 ~ 21507190 (+) True AMCG00000657
AMCG00000658 mRNA downstream 31956 21509374 ~ 21514322 (+) True AMCG00000658
AMCG00000659 mRNA downstream 39224 21516642 ~ 21526478 (+) True AMCG00000659
AMCG00000661 mRNA downstream 49452 21526870 ~ 21530529 (+) False AMCG00000661
AMCG00000660 mRNA downstream 81095 21558513 ~ 21565648 (+) True AMCG00000660
TU190974 other upstream 626380 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 1497828 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2904216 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 3050372 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 3310522 18153864 ~ 18159321 (+) True G150976

Expression Profile