RNA id: AMCG00000654


Basic Information

Item Value
RNA id AMCG00000654
length 363
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00000654
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 20920718 ~ 20921397 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGCCCTCCACGGCAGTCTGAAGGCTCTGCAGGCTCTGGGTCTGCTGGACACCGTGATGTACATGGCTGGGGTCTCGGGCTCCACATGGGCCATGTCTAACCTGTACTCGGACGCCGATTGGTCACAGCGAGACCTACAGGGACCAATTACGCGAGTCCAGGCTGAAACCTGCAAGAACCAGCATGGCGCCTTCTCCCCCGGGCAGCTGCAGTACTACTACCAGGAGGTGCAGAACCGCAGGCGCATGGGCCAGCTGGTGTCGGTCATCGACATGTGGGGGCTCATCATCGAGTACTACATCCACGGGCAGGTACAGCCTCCGAGCGTATTCAGCCCCCTTGTGTCCCCACTGAGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191011 lncRNA upstream 1318 20918699 ~ 20919400 (+) True G151709
TU191010 lncRNA upstream 2180 20917942 ~ 20918538 (+) True G151708
TU191008 lncRNA upstream 2848 20917150 ~ 20917870 (+) True G151706
TU191004 lncRNA upstream 50307 20870184 ~ 20870411 (+) True G151702
TU190973 lncRNA upstream 79226 20841255 ~ 20841492 (+) True G151675
TU191062 lncRNA downstream 219789 21141186 ~ 21141460 (+) True G151752
TU191091 lncRNA downstream 566335 21487732 ~ 21529378 (+) False G151775
TU191092 lncRNA downstream 606193 21527590 ~ 21567174 (+) False G151775
TU191097 lncRNA downstream 608001 21529398 ~ 21533538 (+) True AMCG00000661
TU191101 lncRNA downstream 614834 21536231 ~ 21542398 (+) True G151782
AMCG00000650 mRNA upstream 3573 20879319 ~ 20917145 (+) True AMCG00000650
AMCG00000642 mRNA upstream 50980 20855091 ~ 20869738 (+) True AMCG00000642
AMCG00000643 mRNA upstream 82438 20836579 ~ 20838280 (+) True AMCG00000643
AMCG00000648 mRNA upstream 110692 20809157 ~ 20810026 (+) True AMCG00000648
AMCG00000634 mRNA upstream 186514 20703688 ~ 20734204 (+) True AMCG00000634
AMCG00000641 mRNA downstream 317316 21238713 ~ 21239930 (+) True AMCG00000641
AMCG00000649 mRNA downstream 548446 21469843 ~ 21477418 (+) True AMCG00000649
AMCG00000657 mRNA downstream 556522 21477919 ~ 21507190 (+) True AMCG00000657
AMCG00000658 mRNA downstream 587977 21509374 ~ 21514322 (+) True AMCG00000658
AMCG00000659 mRNA downstream 595245 21516642 ~ 21526478 (+) True AMCG00000659
TU190974 other upstream 77255 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 948703 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2355091 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 2501247 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 2761397 18153864 ~ 18159321 (+) True G150976

Expression Profile