RNA id: AMCG00000657


Basic Information

Item Value
RNA id AMCG00000657
length 2695
RNA type mRNA
GC content 0.52
exon number 24
gene id AMCG00000657
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21477919 ~ 21507190 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATTCCCAAACAAGATGGCGGCGTCCGTGCGGGAGAAGCAGACAGCTGCTCTGAAGCGGATGCTGAATTTTAACGCTCCTCCTTTGAAGAACAGCTCATCGGAGCCAGTATGGAAGGTCCTCATCTACGACCGGTTCGGCCAGGACATCATCTCCCCACTGCTGTCGGTCAAGGACCTCAGAGACATGGGCATGACTTTGCACCTGCTACTGCACTCGGACCGAGACCCGATCCCCGATGTCCCAgccatttattttgtcatgcCGACGGAGGAGAATATTGACCGGATATGCCAGgatcTGAGGAACCAACTCTACGAGTCCTACTACCTGAACTTCATCTCTGCGATATCGAGGAGTAAACTAGAGGACATCGCAAGCGCAGCGCTGGGGGCCAACGCGGTGACGCAGGTTACCAAGGTGTTCGATCAGTATTTGAACTTCATCACACTGGAGGACGACATGTTTGTGCTCTGCAATCAGAACAAGGAGCTCATCTCGTACCACGCCATTAACCGGCCAGACATCATGGACACTGACATGGAAGCCATAATGGACACCATCGTGGACAGCCTCTTCTGCTTCTTCGTGACTCTGGGTGCTGTGCCGATAATCCGCTGCCCCCGAGGGAACGCGGCAGAGATGGTAGCAGTGaAACTGGACAAGAAGCTCCGTGAGAACCTGAGAGACGCCCGGAACAGCCTGTTCACTGGGGACACCATGGGCACCGGACAGTTCAGGGTGAACCTGGAGGAGTCCTCCGGGCCCGAGGCCTCCCCCGCCGGCGCCCGGcccaagaagaagaacaagaaaaccTATGACCTGACCGCCGTCGACCGGTTCTGGCAGAAACACAAGGGCAGCCCATTCCCAGAGGTCGCCGAATCGGTCCAGCAGGAGCTTGACACGTACCGGGCCCAGGAGGACGAGGTCAAGCGCCTGAAGAGCATCATGGGCCTGGAGGGAGAGGATGAAGGAGCCATCAGCATGCTGTCCGACAACACGGCCAAGCTCACCTCGGCCATGagCTCGTTGCCCGAGCTGCTGGAGAAGAAGAGGCTGATCGATCTTCACACGAACGTGGCGACGGCAGTTCTGGACAACATCAAGACTCGGAAACTCGACGTGTACTTTGAGTACGAAGAGAAGCTGATGAGCAAAAGCACCCTTGACAAGTCTCTGCTGGACATGATCAGCGACCCGGATGCTGGGACTCCAGAGGACAAGATGAGACTCTTTCTGATTTACTACATCACTGCACAGCAGCCCCCTTCTGAGGCGGACCTGGACCAGTACAAGAAGGCCCTGATGGACGCCGGCTGCAACCTGTCTCCCCTGAACTACATCAAGCAGTGGAAAGCATTCACCAAGATGGCGGCAACCCCGGCCAACTATGGGAGCAGTGGAGCCAAGACTCTGGGccTGTTTTCCAGGGTCATGAACACGGGCTCTCAGTTCGTCATGGAAGGGGTGAAGAATTTAGTCCTGAAGCAGCATAACCTGCCCGTGACTCGCATCCTGGACAACCTGATGGAGATGAAGTCCAACCCGGAAACCGATGACTACAGGTACTTTGATCCCAAAATGCTACGTGGCAGTGAAAGCTCCATCCCCAGGAACAAGAATCCGTTCCAGGAGGCAATTGTGTTTGTGGTGGGTGGAGGCAATTACATCGAGTATCAAAACCTGGTCGACTACACAAAGGCCAAGCAGGGCAAGCGCGTGCTGTACGGCTGCAGCGAACTCTTCAACGCCTCTCAGTTTCTCAAACAGTTATCTCAACTTGGACAGAAATAGGAGACGGACGAACACAAGCGTGCGTCCTCCGGGATGTTTCGCTTTATGGACAGTTTGGACTAACCATCTACGCCACCCTTCCCACAGAGCCGCCCTGGTGAGGCTGTAGCGCCTGGGTCAGCGCTCCTCCACTCCTTCGATAGTTTCTAAAACTCGCTCTTTCAACCCCTTTGCTTGATTCCATTTCTGTCCACGTGACGCAGATGTATTAACCGCCCTGCGACGTCTTCTGATTTACCCTGCATTCCTTTCTTACAAACTTGAGGCTCAGAGGTTTATTTATCCGGGGGAAACGCACAGGATGTCCTGGGACTTGATGAAGGACTAGTTATACAGACTCGGATAAACATTTCTACTTTCTGGGCTTGTCCCCTCTGCCCGTGTTCGACTCGACGCCTTCCTCTGTTCCTCTGACGTGTCCGTGTCTCTGCTGTGACCGTGTCGGTCCTGACGGAGCTGCCTTGTCTCTCTGAGGGTCtttacagctgtgttttctgGGAACCAAAtcaaaatccattaaaatgtgtaacaatTGATTTTATTAGCCTGAGAGTGGAAGTAAGAGGCTCGGCTTAAGGCATGAGACTTAAAGAGACGCAAATAATTCCCATCGTTGGTTCTCTCAGCTCCTGAACTTCTCGCCTGGTTCCCACTCTGTTATCTGTTGCTCGATGCAATGTCTCAATAAACAGTTAAATACTATCGCCTCCTGTGGCTTCCTTACCTCTTGAGATGTTAGAAACAATAATTTTCTTTGAGGTTTaatgtaactgtatttttgtatttatttattatttattattaacaccTCTGTTCAAACACAGAAGACCATAGTCTTCTAGTAAACGTAACCCTGATCGTCACTTTCTCAACCCCCCGGGGTGTCAAAGACACTTT

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0031101 fin regeneration biological_process

KEGG:

id description
K19998 SCFD1, SLY1; sec1 family domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191062 lncRNA upstream 336459 21141186 ~ 21141460 (+) True G151752
TU191011 lncRNA upstream 558519 20918699 ~ 20919400 (+) True G151709
TU191010 lncRNA upstream 559381 20917942 ~ 20918538 (+) True G151708
TU191008 lncRNA upstream 560049 20917150 ~ 20917870 (+) True G151706
TU191004 lncRNA upstream 607508 20870184 ~ 20870411 (+) True G151702
TU191092 lncRNA downstream 20400 21527590 ~ 21567174 (+) False G151775
TU191097 lncRNA downstream 22208 21529398 ~ 21533538 (+) True AMCG00000661
TU191101 lncRNA downstream 29041 21536231 ~ 21542398 (+) True G151782
TU191090 lncRNA downstream 51660 21558850 ~ 21567174 (+) True G151775
TU191123 lncRNA downstream 88648 21595838 ~ 21598156 (+) True G151804
AMCG00000649 mRNA upstream 501 21469843 ~ 21477418 (+) True AMCG00000649
AMCG00000641 mRNA upstream 237989 21238713 ~ 21239930 (+) True AMCG00000641
AMCG00000654 mRNA upstream 556522 20920718 ~ 20921397 (+) True AMCG00000654
AMCG00000650 mRNA upstream 560774 20879319 ~ 20917145 (+) True AMCG00000650
AMCG00000642 mRNA upstream 608181 20855091 ~ 20869738 (+) True AMCG00000642
AMCG00000658 mRNA downstream 2184 21509374 ~ 21514322 (+) True AMCG00000658
AMCG00000659 mRNA downstream 9452 21516642 ~ 21526478 (+) True AMCG00000659
AMCG00000661 mRNA downstream 19680 21526870 ~ 21530529 (+) False AMCG00000661
AMCG00000660 mRNA downstream 51323 21558513 ~ 21565648 (+) True AMCG00000660
AMCG00000671 mRNA downstream 129560 21636750 ~ 21650005 (+) True AMCG00000671
TU190974 other upstream 634456 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 1505904 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2912292 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 3058448 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 3318598 18153864 ~ 18159321 (+) True G150976

Expression Profile