RNA id: AMCG00000658


Basic Information

Item Value
RNA id AMCG00000658
length 1224
RNA type mRNA
GC content 0.62
exon number 6
gene id AMCG00000658
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21509374 ~ 21514322 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGACAGGGGCTGATGGACAGCTACAGCATGGACCTCCACAACCGGACCGTGTACCGGGTCTCCGAGGACGGCGAGACGGCCATCGGCATCTATTTAATTACTCTGGGCTGGCTGTCCTGGGTGGGGAACGGAGTCGTCATCTTCCTCCTGTCCAAGCAGAGACGCGTCCTGGAGCCGCACGACTATCTCACCTTCAACCTGGCCGTCTCCGACGCCAGCATTTCCATATTCGGATACTCGAGAGGCATCCTGGAGATCTTCAACGTGTTCAGGGACGACGACTTTCTGATCAAGAGTATCTGGACCTGCAAGGTGGACGGGTTCCTAATCCTGCTCTTCGGTCTGATCAGCATCAACACACTGACAGCCATCAGTGTCATCCGATACATCAAAGGATGTCAGCCTCACCAAGccTACAGGATCAACAACTGCAGTGTGGCGCTGGCCATCGTGGCCGCCTGGCTCTGGGCTCTGTTCTGGGCCGGAGCTCCTCTCCTGGGCTGGGGCAGCTACAGAGCCCGCAAGTACGGGACCTGTGAGATTGACTGGGCCCGGGCCAGGCACTCCCTGGACTATAAGTCCTACGTGGTCGGCATCTTCTTCTTCAACTACTTCATCCCGGTCTTCCTCATGGTCTTCTCCTACTCGTCGCTCATCCGCAGCGTCAGGTCCAGCCACAAGTCGACGCGCGGGGACGAGATCAGCGAGCGGCAGAGACGCATGGAGCGCAGCGTCACTCGGGTGTCCTTTGTGGTGTGCACTGCCTTCATCCTGGCCTGGTCTCCCTACGCCGTCATCTCGTTGTGGTCGGCCTGGGGCTTCCAGGCGCCCCCCCTCGCCAGCGTCCTGGCCAGCCTGTTCGCCAAGTCTGCCAGCTTCTACAACCCGCTCATCTACATGGTCATGAGCACCAAGTTCCGGCGGGACCTGCAGGCGATGCTCCGCTGCCTCTGGGGCCCTGGGCCGGCCAGCGCCACGCCCCACCTCCAGACGCCGGTACGGGCCGGGCAGCAGGGGGCGCCGGCCCAGCCCGAGCAGGTGCAGATCGCCGTGGAGGGGGACAGGAAAGATGGCCAGCCGGTGCCGGACAGTGGCGACTCGGGGGTGGACACGGGCAACCAGAACAGCCCTGCGGAGGTCCAGTCCGCTCCCCATCTGAACCACAACCACTTGACCTGCAGACCCTTTCTGAGGAAGCCCAGCGACTCCGGACGCCTCTGA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191062 lncRNA upstream 367914 21141186 ~ 21141460 (+) True G151752
TU191011 lncRNA upstream 589974 20918699 ~ 20919400 (+) True G151709
TU191010 lncRNA upstream 590836 20917942 ~ 20918538 (+) True G151708
TU191008 lncRNA upstream 591504 20917150 ~ 20917870 (+) True G151706
TU191004 lncRNA upstream 638963 20870184 ~ 20870411 (+) True G151702
TU191092 lncRNA downstream 13268 21527590 ~ 21567174 (+) False G151775
TU191097 lncRNA downstream 15076 21529398 ~ 21533538 (+) True AMCG00000661
TU191101 lncRNA downstream 21909 21536231 ~ 21542398 (+) True G151782
TU191090 lncRNA downstream 44528 21558850 ~ 21567174 (+) True G151775
TU191123 lncRNA downstream 81516 21595838 ~ 21598156 (+) True G151804
AMCG00000657 mRNA upstream 2184 21477919 ~ 21507190 (+) True AMCG00000657
AMCG00000649 mRNA upstream 31956 21469843 ~ 21477418 (+) True AMCG00000649
AMCG00000641 mRNA upstream 269444 21238713 ~ 21239930 (+) True AMCG00000641
AMCG00000654 mRNA upstream 587977 20920718 ~ 20921397 (+) True AMCG00000654
AMCG00000650 mRNA upstream 592229 20879319 ~ 20917145 (+) True AMCG00000650
AMCG00000659 mRNA downstream 2320 21516642 ~ 21526478 (+) True AMCG00000659
AMCG00000661 mRNA downstream 12548 21526870 ~ 21530529 (+) False AMCG00000661
AMCG00000660 mRNA downstream 44191 21558513 ~ 21565648 (+) True AMCG00000660
AMCG00000671 mRNA downstream 122428 21636750 ~ 21650005 (+) True AMCG00000671
AMCG00000662 mRNA downstream 169293 21683615 ~ 21687385 (+) True AMCG00000662
TU190974 other upstream 665911 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 1537359 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2943747 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 3089903 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 3350053 18153864 ~ 18159321 (+) True G150976

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023987 True 2699 mRNA 0.42 6 NC_007128.7 28760586 ~ 28770800 (-)
grasscarp (Ctenopharyngodon idella) TU434872 True 1564 lncRNA 0.46 1 CI01000189 1810636 ~ 1812199 (+)