RNA id: AMCG00000660


Basic Information

Item Value
RNA id AMCG00000660
length 774
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00000660
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21558513 ~ 21565648 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGGCGACACGATTACTGAAGCCCTGCAACTGCCCCACACAGCACCCGCTCCCAGCCCGCAGCGGACAGTGTCAGTATCATCTGACCTGGATCAGGGCGGGAGCCCCTGGGTTTGCGACACCGGGGCAGAAACCGCCATCGCAACACAGCCCACTTTGCGCGCAGCCCCGGCCCGGGTCGGAGGAGTGCTCGGGCGGGCGGGCTTCACCTCCCCGAGGACCGTCCTGCACGGCGAGAACTGCGCTCTCGGGTCTCCGTCTGGATCTCCTGCTCTGCGCCTCGGCATCCGCGCCCGAGTCTCCCGGAGACGCCAGCTCCACACACCACAGGGGAAGCAGCGAGCGAACATGATCAAGTTTTTCCTGATGGTCAACAAGCAGGGCCAGACACGGCTGTCCAAGTACTACGAGCACGTGGACATCCAGCGCAGGAGCGCCCTGGAGGCCGACGTCATCAAGAGCTGCCTGTCCCGGACCAAGGAGGAGTGCTCCTTCGTCGAATACAAGGACTTCAAGCTCATCTACCGGCAGTACGTGGCGCTGTTTGTCGTGGTTGGGGTGGACGACACAGAGAACGAGCTCGCAGTGTATGAACTTGTACACAACTTCGTGGAGGTGCTGGACAAGTACTTCAGCAGAGTGATCATGTTCAACCTGGACAAAGTGCACATCATCCTGGATGAGATGATCCTGAACGGGCGCACTGTGGAAACGAACAAAAGCCGGATCCTGGCGCCGCTGCTGGCGCTGGACAAGATGGCGGAGAGCTGA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12403 AP4S1; AP-4 complex subunit sigma-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191101 lncRNA upstream 16115 21536231 ~ 21542398 (+) True G151782
TU191097 lncRNA upstream 24975 21529398 ~ 21533538 (+) True AMCG00000661
TU191091 lncRNA upstream 29135 21487732 ~ 21529378 (+) False G151775
TU191062 lncRNA upstream 417053 21141186 ~ 21141460 (+) True G151752
TU191011 lncRNA upstream 639113 20918699 ~ 20919400 (+) True G151709
TU191123 lncRNA downstream 30190 21595838 ~ 21598156 (+) True G151804
AMCG00000661 mRNA upstream 27984 21526870 ~ 21530529 (+) False AMCG00000661
AMCG00000659 mRNA upstream 32035 21516642 ~ 21526478 (+) True AMCG00000659
AMCG00000658 mRNA upstream 44191 21509374 ~ 21514322 (+) True AMCG00000658
AMCG00000657 mRNA upstream 51323 21477919 ~ 21507190 (+) True AMCG00000657
AMCG00000649 mRNA upstream 81095 21469843 ~ 21477418 (+) True AMCG00000649
AMCG00000671 mRNA downstream 71102 21636750 ~ 21650005 (+) True AMCG00000671
AMCG00000662 mRNA downstream 117967 21683615 ~ 21687385 (+) True AMCG00000662
AMCG00000665 mRNA downstream 122467 21688115 ~ 21701292 (+) True AMCG00000665
AMCG00000664 mRNA downstream 146042 21711690 ~ 21716183 (+) True AMCG00000664
AMCG00000666 mRNA downstream 181699 21747347 ~ 21753688 (+) True AMCG00000666
TU190974 other upstream 715050 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 1586498 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2992886 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 3139042 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 3399192 18153864 ~ 18159321 (+) True G150976

Expression Profile