RNA id: TU191097


Basic Information

Item Value
RNA id TU191097
length 2001
lncRNA type sense_over
GC content 0.49
exon number 2
gene id AMCG00000661
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21526870 ~ 21533538 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGCACTCTGGGGGGGCGTGGGGGTCCGGGCAGAGCTACACTTACTTCCTGACATCAGGTAGATTCCATTGGGGTCCACGGCCAAACTGGTGACTGCATCCAGGTGGGCCACCATGGCGTGGATGAGTTTACCTGGTTGGCAGGAAGAGGGACAGACATGTGTTCATTACGGTAAGCATTGTATACACTGTACGTGTCTGACAAgtttaaaagctttttcttcCCAATTCAAACTGTTTTAGTCTGGGAAGAAGTGTCATCGTGCCTTTTCATCGTCACACAAGCAGCACATCTGTTCTCAGACCCTTGCGCGCTGGCAGTGACCACTAGAGGGCCACACGCTTCTCGACCCGGTCAATGCCTAGGCCGCTGAAGAAACACAAATCTATATGCAATGAAAATTTGGTCCTACTTTTACTCTTTGGTCtctacattttttccagagctgtattttacTCCTCTTAACATTGGAacaaattgagaccactccaagttcagaaatcagagctgtatattcataaagattcttCAGAATAAAAAGTACTCCTAACTCTCCCGATTAAGTAGTGGACCTtgtgacgtctcctaaatattAGTAGTTGGGAGACTGtgcttattgaaggctgtgatgatggtcccaaatcatcacggcaacagggaaaatgcaacaatgtagcgAAACCACACTGGCATTAACACACAAGATCGTCCAACAGGTTATTGATTTCTCCACGACTGCGTGACAAATACCCACAAAATAATCGATGCCGGCCTACATGCGATCTTGCATGTTTATTCAGTGATCCGTATTCTCACCTAAACAGTCATGAAAATGTGCCATCGTTTTTTCTTACGATTGGATCCCACTCCCAGCTAAAAGTAGAGACTATGACGACTTCCACGTCCTACTCTAAAAGTTTGAACGAGGAGTAATTTTACTCCTAAACTGTGTGATTCCTAGGAATAATTCTGAGATTTAATGCAGACGGTGTCTCAGACTGGACTGGAACCTCTGACCCAACACTCGGGCACAGGGCTTCACACATCTCCAGTCTAATGGCAGCCTCCCCCACCACAGCGTCGGCTCTGGTCACCGGATTGCTCAACGGCTACAAAAATATCCTCCAGTGACGCGTCTGTCCAGCCACACGGCACAGACCAGGACTCGGCCCTCAGCGGCGAATATTAACCCCCCACCTCCATTTGCAACAGTAAGCCGAGCCAACCTACCCGACTTGTTGTCGAAGAACTTGATGTGCCGGTCTTCGTGGGCGGTGATGGTGACGGGCAGCGTGGGGTGGCTGACCACCCGGTTGATGTGGTTCCCTGAAGGAAGGGCTCCGCCAGCGAGCTCATGACCGTGGTGGCCTGCGACGTCTCCAGGTCGTAGATGACGGCGTTGCCGCTATGGAAGGAGGCCACCATGTGGGCCGGGTCGCAACCGTTGAAGTCCACCGACGTGGGGATGCCGTGTTCTGTGAGGAAACCAAGAGAAACCCATCAGACACCAGCGCTCACTTATAAACCCGTCTGACTCTGGCCAGCGCTCACTTGTGTTGAACGGAGCATCACAAGAAGGACAGGCTTAATCGTCTGTCTTAATTAAGAGTCGGCCACCTTGTTCAAGCATCACCGCGAAAACGGTGATCATTCTACAATTGAACGGTTTGGTAGAACCAGTGTTTGTCAGGGACAGCTCTACCCCTAAGTAACTGAGCAGCGCTTATGcttatatttcttaatattaaAGGTTAGGTCGCGTTCGTggtgcgcagatctgcacagttctgcagaattccaccgatcccttCGGCTGACTGCGCAGAACTTCCTTAGTGTTATGATGTCTGATTTatgctgctgtgctgcactTTGGGACCAGGAGGAAGGAGACTATTGTGATTACTGTGGTCAGCAATGGACACGTCTGTTGGGGATCAAACTGCTTCTCTCGCGTGTccgttatctcctgtatcaaatggagaagtggccacaatcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191091 lncRNA upstream 20 21487732 ~ 21529378 (+) False G151775
TU191062 lncRNA upstream 387938 21141186 ~ 21141460 (+) True G151752
TU191011 lncRNA upstream 609998 20918699 ~ 20919400 (+) True G151709
TU191010 lncRNA upstream 610860 20917942 ~ 20918538 (+) True G151708
TU191008 lncRNA upstream 611528 20917150 ~ 20917870 (+) True G151706
TU191101 lncRNA downstream 2693 21536231 ~ 21542398 (+) True G151782
TU191090 lncRNA downstream 25312 21558850 ~ 21567174 (+) True G151775
TU191123 lncRNA downstream 62300 21595838 ~ 21598156 (+) True G151804
AMCG00000659 mRNA upstream 2920 21516642 ~ 21526478 (+) True AMCG00000659
AMCG00000658 mRNA upstream 15076 21509374 ~ 21514322 (+) True AMCG00000658
AMCG00000657 mRNA upstream 22208 21477919 ~ 21507190 (+) True AMCG00000657
AMCG00000649 mRNA upstream 51980 21469843 ~ 21477418 (+) True AMCG00000649
AMCG00000641 mRNA upstream 289468 21238713 ~ 21239930 (+) True AMCG00000641
AMCG00000660 mRNA downstream 24975 21558513 ~ 21565648 (+) True AMCG00000660
AMCG00000671 mRNA downstream 103212 21636750 ~ 21650005 (+) True AMCG00000671
AMCG00000662 mRNA downstream 150077 21683615 ~ 21687385 (+) True AMCG00000662
AMCG00000665 mRNA downstream 154577 21688115 ~ 21701292 (+) True AMCG00000665
AMCG00000664 mRNA downstream 178152 21711690 ~ 21716183 (+) True AMCG00000664
TU190974 other upstream 685935 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 1557383 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2963771 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 3109927 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 3370077 18153864 ~ 18159321 (+) True G150976

Expression Profile