RNA id: TU188017


Basic Information

Item Value
RNA id TU188017
length 1871
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G149415
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9973048 ~ 9975172 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGGAAATGTGGGCTCTCTGAATTATAAGTGGTGTTCATTAGTTAAGTTCAACTTTAGATTTGAGGCTTGAAAATCAAGCACTCGGATCATAGTGATTCAGTCGTAATTGAACTATGGCGACTCTATAGCGACCTGACTACAAGTCTATCAGGAAATAACAGATCAGAAACAGAAATACCCCCCCAAAAAGCCTGGGATAAGATCTTACTTATTTGTAATTGTGAAAAGTCtagttttgtattatatagacctgctgaaaacaaaatacttgcCTGACTTATTGTATTACAACAAGGGGGAAATCATCATGAAGTCTCCCCTCTATCTATGAGAGATGGATGTTTAGCAGTATCTGCAACAACCATTAACTATAGCAAAATTAAAGATTGAACATTTCAGAAGTTATACTAtccaaaaatatgtttatttaaaacaaacaaaaaatggtgGGCAGTACAAAAAGGGTAAACAGATTTCCCTAAAATGTCACTTCCTCAAatctacaacaaaaaaatggacaaataagagaaaatattttcttttcttatataTGCCAAACAGTCATGGACAGATAAGATATATAATAAAGGAcctaaacttaaaataattaccTAATTAAATAGCCAATACATACACCAGTGATAATGCAGAAACTACATAAAAAATGCACTGATCTATTCTTAAATTGAAGAATCTCTCCAGTGTACTAGCAACAGAAATCTACAGTAGGTCCTGTTTTTTAAGGAACAGTTAGAAATACCCAAAGCTGTGAGGCAAAATGCAAGTCTACCACTGTGATGCTGGCATTAATTAGACAGACTGAAAGAATACAAATGCAGGAACCCCAGATGTGAACATTATCAGTAGACTTCATAGAACTGAACGCCATTTAAAAAGTAAGTTTAATTTAGCAAACCTTACAGAGATTCAAGCAGTTTTAAAGCAAGAGGATCAGCTCAGAATACTAAAATGTCTGAGTTTCAGCAACGAACATCCAAGATTCTCCCCAATGTTCTCataatcaaaaaaaaaaaaaatgtaagaaattagAATTCTCATGAAAAGTCTGCTATACACAGATTTTAAGCTAGCTTGGACAAATTCTGTACTGAAATATTGCAACTGTATTGTTAGacaatatattacagtttaattGACTTGTATGCTACAAGTTATTTAGATTTTATGGATCCCTGGACCAGAATCATATCAAAATGACCAGAGTATTacttcacacagacacatttataAACTTAGACATTTGACTGAAGGTTGacatgaagcaaaaaaaaaaaaaaaaaaaatgctacctTGTGCTCCAGCATTTTGAGCCACTTAGCGACAAgattctgaaattaaagtttGGCCATGCGGACACCAGTTGTTCATCTGTGCACACTGAAATTAGTGCGCACAAAAATGCAGTcctgtaaaatgtacaattgtCTCTAGTAGAAAGGAACAAGTGAACAAAAATGGAAGAAGTAACTTTACAACAatcttgcttttaaaaatcGAGAGCCCTCCTTATACTTTTATGAAACATAGGATAGGAGTCGGCTGGTCTGAAGAGTGGATAGAAAGAAAgccaactaaaaaaaaaagtttgtttccTTATTCCCCTTCAGTACTTTTATTTCACCAGTCCAATCTTCTTTGCTTCTGTTTCATATATTAACAACCTCCACATTTTCACTATGAAGACTTCCGCTTCCTCATCAAGTAcCATAGCAACATCATCTAGAATGCCCTGGGGTGTACTGTGAGCCATGACCTGTAAGAGAAACACGTTTAAACAGGAGTCTAGCAGTGTTTGAGTAAAAATGGTATTAAGAACAGTACAGAAGCTGTGGTAAAgttctgaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188022 lncRNA upstream 10477 9957713 ~ 9962571 (+) True G149416
TU187938 lncRNA upstream 196060 9719947 ~ 9776988 (+) True G149359
TU187924 lncRNA upstream 399484 9561557 ~ 9573564 (+) False AMCG00000281
TU187903 lncRNA upstream 457448 9514822 ~ 9515600 (+) False AMCG00000286
TU187853 lncRNA upstream 486367 9483359 ~ 9486681 (+) False AMCG00000285
TU188070 lncRNA downstream 46250 10021422 ~ 10021853 (+) True G149450
TU188079 lncRNA downstream 54522 10029694 ~ 10030786 (+) True G149454
TU188081 lncRNA downstream 59402 10034574 ~ 10035072 (+) True G149455
TU188090 lncRNA downstream 73224 10048396 ~ 10048621 (+) True G149464
TU188091 lncRNA downstream 74093 10049265 ~ 10049532 (+) True G149465
AMCG00000292 mRNA upstream 52966 9911136 ~ 9920082 (+) True AMCG00000292
AMCG00000294 mRNA upstream 96104 9864987 ~ 9876944 (+) True AMCG00000294
AMCG00000293 mRNA upstream 132619 9828089 ~ 9840429 (+) True AMCG00000293
AMCG00000282 mRNA upstream 226040 9721890 ~ 9747008 (+) True AMCG00000282
AMCG00000283 mRNA upstream 267599 9688747 ~ 9705449 (+) True AMCG00000283
AMCG00000306 mRNA downstream 27549 10002721 ~ 10010111 (+) True AMCG00000306
AMCG00000307 mRNA downstream 88639 10063811 ~ 10072297 (+) True AMCG00000307
AMCG00000297 mRNA downstream 117821 10092993 ~ 10100250 (+) True AMCG00000297
AMCG00000305 mRNA downstream 573658 10548830 ~ 10549199 (+) True AMCG00000305
AMCG00000304 mRNA downstream 574760 10549932 ~ 10550914 (+) True AMCG00000304
TU188032 other upstream 2247 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 1391936 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2610341 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2610341 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 2676384 7290666 ~ 7296664 (+) True AMCG00000216
TU188165 other downstream 559418 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2007288 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 2704498 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 3715667 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 4157966 14133138 ~ 14153840 (+) True AMCG00000412

Expression Profile