RNA id: TU188070


Basic Information

Item Value
RNA id TU188070
length 432
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G149450
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 10021422 ~ 10021853 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTAATGTAGTGCTTGTTACACACAACTCAGTCCCGAGTGGTGGGTTTAATCACATGATTGAACGCTTGTAATTTAGTTTGCAAGTTCATCattgatagaaagaaaaaaatgaacagcaacacatttgtatttgtttgaatgtattttttatccTGCAACCAACAAAAACTACGTCACCCACAATTCTCTTCTATAAACATTTGGTCCGCAAAGCACAGTATTCAGGGTTTGAACTGACAGTGCAAAGAGCAGAAGATAAGCGATTTTTGTAAAGGACATCATGATCATATTAATTGGAGGTGTCGGggcttctattattattttctgtgtgttaaAGCCTTACATCAGGTATGTACACTGTCGTATTTTGATGTAGCAGAATTCAGTCTTACGCAAGTTTAATTTTTTCCTGTATCATCGTGTGATTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188017 lncRNA upstream 46250 9973048 ~ 9975172 (+) True G149415
TU188022 lncRNA upstream 58851 9957713 ~ 9962571 (+) True G149416
TU187938 lncRNA upstream 244434 9719947 ~ 9776988 (+) True G149359
TU187924 lncRNA upstream 447858 9561557 ~ 9573564 (+) False AMCG00000281
TU187903 lncRNA upstream 505822 9514822 ~ 9515600 (+) False AMCG00000286
TU188079 lncRNA downstream 7841 10029694 ~ 10030786 (+) True G149454
TU188081 lncRNA downstream 12721 10034574 ~ 10035072 (+) True G149455
TU188090 lncRNA downstream 26543 10048396 ~ 10048621 (+) True G149464
TU188091 lncRNA downstream 27412 10049265 ~ 10049532 (+) True G149465
TU188092 lncRNA downstream 29323 10051176 ~ 10051753 (+) True G149466
AMCG00000306 mRNA upstream 11311 10002721 ~ 10010111 (+) True AMCG00000306
AMCG00000292 mRNA upstream 101340 9911136 ~ 9920082 (+) True AMCG00000292
AMCG00000294 mRNA upstream 144478 9864987 ~ 9876944 (+) True AMCG00000294
AMCG00000293 mRNA upstream 180993 9828089 ~ 9840429 (+) True AMCG00000293
AMCG00000282 mRNA upstream 274414 9721890 ~ 9747008 (+) True AMCG00000282
AMCG00000307 mRNA downstream 41958 10063811 ~ 10072297 (+) True AMCG00000307
AMCG00000297 mRNA downstream 71140 10092993 ~ 10100250 (+) True AMCG00000297
AMCG00000305 mRNA downstream 526977 10548830 ~ 10549199 (+) True AMCG00000305
AMCG00000304 mRNA downstream 528079 10549932 ~ 10550914 (+) True AMCG00000304
AMCG00000314 mRNA downstream 1106005 11127858 ~ 11131679 (+) True AMCG00000314
TU188032 other upstream 50621 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 1440310 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2658715 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2658715 7361020 ~ 7362707 (+) True AMCG00000217
TU187271 other upstream 2724758 7290666 ~ 7296664 (+) False AMCG00000216
TU188165 other downstream 512737 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 1960607 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 2657817 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 3668986 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 4111285 14133138 ~ 14153840 (+) True AMCG00000412

Expression Profile