RNA id: TU188861


Basic Information

Item Value
RNA id TU188861
length 1194
RNA type TUCP
GC content 0.45
exon number 2
gene id G150069
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13690839 ~ 13692589 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAATTCGATTAGTGATGTTTATTGGAGGTTTATCCCATAGGTCTACTCCAGAACAAACTGCTACAAGGATAGTAAATCACCCCACACACAGAACAAAGAATGTAAAGATGTTCATTTCAAAAACCAATTCAGTTAGAATAGATAATgcacgtttttattttatgactcTATTCCTGAACAAGAGCACGGATTGACCCTAAGCTTCAGTTCCCACCCtcagttttaataatttgaacaaATGCCTTTCAGAATTTTGTTAAActattaatggaaaaacatgaTATACATATTATGTACAGAGATCTTTGCTCATGCAGAATGTGTATTCAGTACAAGAGGTAAATCACTGCCCCCACCGAGTCTGAATAAGGAAAGCATTAGAATCCGTGATGTGCTCAGCTGCACGCACATGTGGCCAGAGTTTAGGAGTTGGCGTTGGGTCCCTTCTTCTTGCCGAATGTGGGCACCACGTTAACGAAGCGGCGGTTGTACTGGATACGACGCTTCGCCCGCCcagtcttcttcttcttcttctcctgctTGTCCACCTTGGCGTCTGTCCGCGCACCTTGCCAGCTCGAGCGAGAGAGCCGTGGACCTTGCCTAGTGAGAGGGAAATGAAGATGGATTCAACGAAACGGGAAGAAATCCCGTCTTTGAAGCTTGTATTCATCGAAATGTGCCATTATCAAATCATTTGTACCACAGCAGACATTTTAGGGGGTtggtaattatatatttagatgcctacaatacattatacacaCGCAAAACAAGATTAAAGGAAGATGGACTCCCAGGCAGGCAGTTTAAATGTCACCTAAAAAACTGTTCGGGGACCAGTTTGGCAGACCAAGATTAACACGGTCATTGAATATTCCAATGCAATTTTTCATCGGGGAGATCCCAGACTCGTGCCAATCAAGTCTGCTTCATTACCATCGCCAAAACCAATCGCATTACATGACACAGACTAGAAACTAGAGAGCAAAGGTCCCCCACCTCCCAGCATCCTTGCCACAACATCAATGGTACAGTGCTCCGACACGCCACAGAGACCCAGAGAGGCATCATCCTCCAGGGGAGTGCCAGCCAGCAGCAGCACCTGCTCCTCGACACACAAGCCCTCCAGAGCCTGGATCCGAGCCTGCAAAACACCCCACAACGACAGCACTTAAGGACGCTTCAGAAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188855 lncRNA upstream 40788 13649403 ~ 13650051 (+) True G150066
TU188827 lncRNA upstream 277775 13412865 ~ 13413064 (+) True G150042
TU188779 lncRNA upstream 722697 12966975 ~ 12968142 (+) False AMCG00000381
TU188614 lncRNA upstream 849166 12833539 ~ 12841673 (+) True G149869
TU188432 lncRNA upstream 1592467 12092387 ~ 12098372 (+) True G149747
TU188905 lncRNA downstream 47187 13739776 ~ 13746116 (+) True G150106
TU189157 lncRNA downstream 772303 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 1040643 14733232 ~ 14733440 (+) True G150364
TU189295 lncRNA downstream 1239189 14931778 ~ 14939473 (+) True AMCG00000443
TU189297 lncRNA downstream 1239189 14931778 ~ 14944400 (+) False AMCG00000443
AMCG00000395 mRNA upstream 441 13687967 ~ 13690398 (+) True AMCG00000395
AMCG00000388 mRNA upstream 10910 13667889 ~ 13679929 (+) True AMCG00000388
AMCG00000387 mRNA upstream 64083 13618488 ~ 13626756 (+) True AMCG00000387
AMCG00000386 mRNA upstream 73214 13608753 ~ 13617625 (+) True AMCG00000386
AMCG00000385 mRNA upstream 280980 13352332 ~ 13409859 (+) True AMCG00000385
AMCG00000394 mRNA downstream 38924 13731513 ~ 13739622 (+) True AMCG00000394
AMCG00000396 mRNA downstream 62219 13754808 ~ 13759231 (+) True AMCG00000396
AMCG00000401 mRNA downstream 66718 13759307 ~ 13759834 (+) True AMCG00000401
AMCG00000404 mRNA downstream 100669 13793258 ~ 13805747 (+) True AMCG00000404
AMCG00000403 mRNA downstream 120476 13813065 ~ 13837190 (+) True AMCG00000403
TU188603 other upstream 962936 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 1705124 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 3155702 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 3720038 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 5109727 8579717 ~ 8581112 (+) False AMCG00000249
TU189044 other downstream 440549 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 3243404 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 3852865 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 4461275 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 4724591 18417180 ~ 18419471 (+) False AMCG00000550

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) LOC110527093 True 394 mRNA 0.51 1 NC_048571.1 12568176 ~ 12568569 (+)