RNA id: TU189412


Basic Information

Item Value
RNA id TU189412
length 3248
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G150506
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15295607 ~ 15299878 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AaggctttaatttttttttattaaatgtacataaagtacacatgataaaaacaaacaagaatagaTTTGTAGTGTACAGGCAAAGTTCTCAAGTAAGACAGAAACTTTGACTTACCTACTACAAAATCAAAGCTCAACATAATTGTCAGAATATAACATCCCACAACCTCACAGTAATCCCTAATGGCCAGAGCAATTGCaggcacaataaatacattttaacatgccATGGACACAAATGTTCACAATAACCCTTATTCTTAGTTTGCATTTTATCTTTGGAAATAAAGAATTATTAAACCAGAAAGACAGATATGTAATTTTCTTCCATTCTTTGGATATTTCTATGTCCACTAATGTGGAAATAAACACCATACTATATTCAATTGAATAAACATACTTTGGTTCAAAAGGTACAAAGGCACTTATGAATATTCAAACAGTTGTGGATCATCAGCAACCTAATAGatagtctgtttttcttttaatgcatcCACAGagaatattttacttaaatctGTATTGATGTGGAACCTTCAGCTACCACTTTATCCATAATTTGATCCATTAAATCCATAGAATATAAAACAACTGTTAGCATCATTATCAgaggtattaaaaaaacaggagtTGAAAATTGGTCAGCTGACTGCattttaataagtaataatatCTATGTAAAATGTCCCCTTAGAGAAACATTGACAGCTGCTTGGGGTTGaaacatgaatatattaaaaatggagACAAAATGAAGCTGAcatttgtgtgattttgaataTGAAAGTAGATTAAGGTTTGCTGTCCGGTTGATGCAGCAGATAATGTCTGAATGCAAATAACTGAGCACAAGGATAAATGAGAAGAATTTCCCATagtgaatggaaaaaaacaaatatgtgccCCCTGGGCCAAGAACATAtggcaaattatatatatgaaatgacCAGTCAGTGACCATcaatgaataatgaaataaaacaaataccaaaaacaaaataccaagccaaaaattcaacaaataaaacagtatcttTCTTCAACAGACATGCTATGTTCAATTGTTAAACACCATAATATGAGTGCATACTGATATATATTGACCTAATCTCAGCAAAGTGTGAATGTCAATATGTTCATTTGATATGATCTCTGTGTCATCAGCAACTCTTGCCCTGGAGTCAGACTGAAGCTGgcatatataaaacaatcttTATGGTATAGAACaccatacaatacatacaataCCCCCCCCCCAGCAAGACcacatagaaataaaaacattattccaTTTTCACTAGGacagtaaaaaagaaaagaaaaaacaacacccaAAACAGATTTTATCAGTAGTATGACTGTCACCTACCCTGGCATTTAGATTATGACAGTTCAAAAAACAATTCACAATCATTCAcacaattctaaaaaataaaaggcctGAATACAGAGTGTTCACTAACTAAAAAAAGCACACTAACTAATATTAGAATGTTATAATTATCATAACGGTGTcttaaaggaaatgaaaaaactTCTGAAGTAGTCTCAAAAATATAAAGATGACAGTATTAGAATATTAGTAAGGCTTATGCATATACTGCCTAGGCAAAAATGGTCTATATTTTATCTTAATtatgaaagtaaatgtttttaagttttatattaagtttttcatgtttgtgaTACATTGCTTAATAAGGAGCTGTTATCATAAAACCTTTGGTGcatattgttttttgaaaaaaataataaaatctaatttgagCATTGTACCCAAAATCCTCACACAGCCAGCAGTTATAAAACTTTCACAAGCTTATACAGATCATCTGAAGCGAATCCTAGAAATCAtaagattttcttttcctttaaaaggtgaatcttaaacaaaacaaaaaagtggtaACTTATTAGGAGTCTCTTTTGGTACAAAGTGGTAATaagaaatgcactttttaaCTGACCAGAGACCTGATGCACCACCACACCACCATGAGGTAAAGCATGCCTTGCTGCTATTCAAGCCCTTTGCAGCTTTATAAACTCAACGTACAGCCTGGAAACAAACTGTTTAAACAGTAGTACGATATCACATGATCTCCACTAACAGGAGGTGCCACAAACAGTTTACATCGTGCCAAAGAAAAGGGGCACAGTGCTGGCTGATAAGGTCAAAGGGTTCACTCTGGACAGCCAGATAACCATGTCAGGTTCTGTGAAATCTTGTTTAATGAATTCTGCCAGCATCCTGGTATGTCCATCTTACGAATGTCTGCCCTGACGCATTCCGTCAGCTCGTTTACTAATAACCAGGTTTCATTGACTGTTGTAACCGTGATCAGTACAGAGAGCAATTCTACGTAACGCTGTTGTTACACCACATTACAACTGGTTTCCTGGATGATAGTAAACACACCGTTTTATTTCTTATAGTACTTATAGTATAGTACACAAATCCTTTTATTTCTTATAGTACTTTTTCCATAGCTATGCAGATAAGAATGTGTTTTGAGAACTTCTATTTagtgaaaataaagaatgaagtCATAACTTTCTGATGGATAGTGTGACGCGCGTCAATTTTCAGCCCACAGGAGTTGCTCTGAAGAAAGACTCATGCATGGATCATAGATTATCACCTTAAACTGAAGAAAAGCAACCTTTAACCCTCGCCACCCCTCGTTTCATGAACTCTCCGCCACAATTCCACACCTTCCAATCACCGTATCACCTCACTACCTCCTGGCATGCACTAGCACAACGTATAAGTGAGCACAAAAACCTTTTTTGCACAACCTCTTCTGACCTTTTAGCACATCCCTCTTATCAAACGTATCTCAGCCACTCTCTGGCAGCAGAAAAGAATCCTCTCTACCCTGCAGCTGAGCCCAACTCTTGGAAACCTGGCCTGTGTAGTTGTGTTGAACTGGCCAGGATCCAATGGTCTAGGTATTAGCGTCCGCTGGTCCAGTGCAGGTCCAGACTACTGACTGTCCCTCGCTGCTCTGTCCGGTTCCTCACCCTCCTCCTCTGGCGTTCGGTCTGCCGGGTGGTTGTTGTTCGTCTCGGATCTTGCAGTGCTCAGAGTCAGGGTCTCGATGGCCTTCCACAACttctcattttctttcagttgaTCGCTAAACTaaaagggtttaaaaataatacataaaatacataacagcAGCAACTGACACTGTGTAGTTGTACACAGTGTGACAGTGTACACCGTTTCATGACACAGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189381 lncRNA upstream 44878 15250517 ~ 15250729 (+) True G150484
TU189372 lncRNA upstream 66345 15228957 ~ 15229262 (+) True G150475
TU189351 lncRNA upstream 134930 15160457 ~ 15160677 (+) True G150460
TU189350 lncRNA upstream 135484 15159608 ~ 15160123 (+) True G150459
TU189349 lncRNA upstream 140523 15154635 ~ 15155084 (+) True G150458
TU189489 lncRNA downstream 315252 15615130 ~ 15619026 (+) False G150563
TU189487 lncRNA downstream 317137 15617015 ~ 15619026 (+) True G150563
TU189578 lncRNA downstream 890942 16190820 ~ 16191021 (+) True G150642
TU189631 lncRNA downstream 1345250 16645128 ~ 16646915 (+) True G150686
TU189636 lncRNA downstream 1348027 16647905 ~ 16649574 (+) True G150687
AMCG00000473 mRNA upstream 1138 15292315 ~ 15294469 (+) True AMCG00000473
AMCG00000462 mRNA upstream 14145 15278456 ~ 15281462 (+) True AMCG00000462
AMCG00000460 mRNA upstream 19112 15271455 ~ 15276495 (+) True AMCG00000460
AMCG00000468 mRNA upstream 32816 15261091 ~ 15262791 (+) True AMCG00000468
AMCG00000461 mRNA upstream 108268 15185447 ~ 15187339 (+) True AMCG00000461
AMCG00000474 mRNA downstream 53099 15352977 ~ 15384001 (+) True AMCG00000474
AMCG00000478 mRNA downstream 126667 15426545 ~ 15442287 (+) True AMCG00000478
AMCG00000470 mRNA downstream 320768 15620646 ~ 15641297 (+) True AMCG00000470
AMCG00000471 mRNA downstream 350413 15650291 ~ 15669353 (+) True AMCG00000471
AMCG00000484 mRNA downstream 378824 15678702 ~ 15694287 (+) True AMCG00000484
TU189044 other upstream 1141767 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 1603018 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 2567704 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 3309892 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 4760470 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 1636115 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 2245576 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 2853986 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 3117302 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 3242499 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile