RNA id: TU189631


Basic Information

Item Value
RNA id TU189631
length 1788
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G150686
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16645128 ~ 16646915 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gAGGAGCAAGAAGGATgtgtttgaaaggaaaataagttTCATAAACTGGAAATGGATAAAACTATTTCTGTAAATGATCAAAATCGCGGATAAAtcctgtttatttaacaaaacgtataaataatgaataataaatagtttgaaacatgtatattaaaaaaaaaaatgaatacaaaaatataaataatgaaatatcgAATGTATGCTAATGCAAAGGATCTGCTTAGCAATTCCCTAAACAGAGCACCATTGAAGTAGATAAATGAAActgtaagaaataaagaaaattaaaaaacagctcTGCAGTGTCTTTCTCCAATTGGAATGATATTCTGAAGTTTTGATATGTAGAATTTTCAAGGCTAGACTTTGCTagtttgtaacacatttttttaagtataataaaaataagaataatagaTGCATGAGACATCACTAAACAActtattatttcttcttattaGTTATAATTCTTGTTATCTTATTAGTTAATTCCCTTCTAGAAGTCTTACTGGAAACAAAGATGCGAAAAAAAGATCCGTGTGCACGATTGGGTTCTCGGTTCACACGTGGAAATATCATACAGGAGAGACAAAAATTAAATCCTAAGCATGTCACGCACTTTGATTTCCTCTCACTTTTTGTTTAGCGATGGCCGTGTTGCCTTATTACCCACAGCAGTCAGACTGGATTTAGACTTCCTCGCAGCTAAGCTCCCAGTGTCATTTAACTGGTCTGGCTGTTTGCATGAAGCAGTTTGGGTGGAATGCTTGGAGGAGGGGCCTGTCAGTTTTCTCTCCCCATGCTGAGTTAATCCTCCCTGCAGGGCACTTCAAAGTGCAGGGTAGTCAAGGATATGGTTAATTACTGAATCTCCTTGAAATTGATGCCAAATCAAGACTTCCCCGGTCCAACTGAATTCTGTCTAGCCAGGACTAATTGTGGGTcctgttttattgtaaaaggCAAGAAAAACACCAGAAAACCCCATAGTTGGGACTGGACTCGTTGTATACTTAGTTCAAGTTGTAGAACTTTGGAAGATGACTTTCATCAGCGAAAGAACCTGCTGTAGACtagagtgcagtgtgtgtatgtgtgtaatgcTGACCATACATTTAATCACATCTCACATTAACTACCCACAATAGGTTCATATATTAAATTTGTTGCTTTTTACCTTTCAGTTAAGACTGTATTATAATCACTACTAAAGCTTCTATAAACTGCCTGTGATTTGTATCCATCCCACAGATATTTTCCCGATGCATTTCTGTTCTGAAATCTGTTTTGTCTCAACATTCGTAATTGTGTGTTTATAGTTTACGTTtggtgtaaaaataatatttgatccCCCCACGaaacattacataatttaaattctacacttcaATTATGACAAGAAGACGTTTTGTGTCTAATTATAGGTTACACACTATAATGAAGGTAACCTGAAGTTTATACCATGGAGTCAAAACTATTGACTTTTGctgctacataaataaattataaaataaaacaaaatgtattattgatgtAGGTGTATCTTGTTCAGTGGCACACTAGAGTATGGCTTATTATGCTTATgctaacaaatataattttgttagTTACTGTTATGGGAGAaacactactaataataatgtgaagCAGCTGTTATTGGACACTGCGATTGCTGTTAAACATTTAGCTTCAGTTTAAGTATAAAGCTCCAAAGTTAATCTGTAGACGTTAGTACTGCAACTCTCCATTtatattctaaaatgtattttaagtcaacaattacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189578 lncRNA upstream 454107 16190820 ~ 16191021 (+) True G150642
TU189489 lncRNA upstream 1026102 15615130 ~ 15619026 (+) False G150563
TU189487 lncRNA upstream 1026102 15617015 ~ 15619026 (+) True G150563
TU189412 lncRNA upstream 1345250 15295607 ~ 15299878 (+) True G150506
TU189381 lncRNA upstream 1394399 15250517 ~ 15250729 (+) True G150484
TU189636 lncRNA downstream 990 16647905 ~ 16649574 (+) True G150687
TU189633 lncRNA downstream 1150 16648065 ~ 16649574 (+) False G150687
TU189639 lncRNA downstream 35000 16681915 ~ 16722627 (+) True G150689
TU189674 lncRNA downstream 164538 16811453 ~ 16811983 (+) False AMCG00000514
TU189742 lncRNA downstream 549562 17196477 ~ 17501853 (+) True G150767
AMCG00000486 mRNA upstream 353631 16280906 ~ 16291497 (+) True AMCG00000486
AMCG00000490 mRNA upstream 412697 16216282 ~ 16232431 (+) True AMCG00000490
AMCG00000492 mRNA upstream 429657 16208705 ~ 16215471 (+) True AMCG00000492
AMCG00000491 mRNA upstream 436852 16198281 ~ 16208276 (+) True AMCG00000491
AMCG00000483 mRNA upstream 615967 16023883 ~ 16029161 (+) True AMCG00000483
AMCG00000495 mRNA downstream 93769 16740684 ~ 16745744 (+) True AMCG00000495
AMCG00000512 mRNA downstream 149178 16796093 ~ 16801794 (+) True AMCG00000512
AMCG00000514 mRNA downstream 164918 16811833 ~ 16814365 (+) True AMCG00000514
AMCG00000513 mRNA downstream 167928 16814843 ~ 16849247 (+) True AMCG00000513
AMCG00000502 mRNA downstream 297145 16944060 ~ 16944477 (+) True AMCG00000502
TU189044 other upstream 2491288 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 2952539 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 3917225 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 4659413 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 6109991 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 289078 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 898539 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 1506949 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 1770265 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 1895462 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile