RNA id: TU189742


Basic Information

Item Value
RNA id TU189742
length 258
lncRNA type read_through
GC content 0.48
exon number 2
gene id G150767
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17196477 ~ 17501853 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctggaacccatagacatcaccagatgctgggtttcttccctggtgatgctctgccaggcctgcactgcagctgtctttagttcctgcttgttcttgggtcgttttgccttcagttttgccttcagcaagtgaaatgctgctcaattggattcaggtcaggtgattgacttggccattgcagaacattgtacttcttcaccttaaaaaggTAAtaggttgctttcgcagtatgcttcgggtcattgtccatctgcactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189674 lncRNA upstream 384494 16811453 ~ 16811983 (+) False AMCG00000514
TU189639 lncRNA upstream 473850 16681915 ~ 16722627 (+) True G150689
TU189636 lncRNA upstream 546903 16647905 ~ 16649574 (+) True G150687
TU189633 lncRNA upstream 546903 16648065 ~ 16649574 (+) False G150687
TU189631 lncRNA upstream 549562 16645128 ~ 16646915 (+) True G150686
TU189793 lncRNA downstream 46357 17548210 ~ 17548508 (+) False G150811
TU189824 lncRNA downstream 153723 17655576 ~ 17702341 (+) True G150831
TU189855 lncRNA downstream 256660 17758513 ~ 17759502 (+) False AMCG00000525
TU189893 lncRNA downstream 367445 17869298 ~ 17870290 (+) True G150877
TU189913 lncRNA downstream 448081 17949934 ~ 17968712 (+) False G150886
AMCG00000508 mRNA upstream 2361 17191781 ~ 17194116 (+) True AMCG00000508
AMCG00000504 mRNA upstream 13397 17170250 ~ 17183080 (+) True AMCG00000504
AMCG00000503 mRNA upstream 89875 17104080 ~ 17106602 (+) True AMCG00000503
AMCG00000498 mRNA upstream 144643 17006469 ~ 17051834 (+) True AMCG00000498
AMCG00000502 mRNA upstream 252000 16944060 ~ 16944477 (+) True AMCG00000502
AMCG00000530 mRNA downstream 27864 17529717 ~ 17539409 (+) True AMCG00000530
AMCG00000526 mRNA downstream 217796 17719649 ~ 17748022 (+) True AMCG00000526
AMCG00000525 mRNA downstream 246657 17748510 ~ 17759582 (+) True AMCG00000525
AMCG00000527 mRNA downstream 258850 17760703 ~ 17768088 (+) True AMCG00000527
AMCG00000520 mRNA downstream 293495 17795348 ~ 17800754 (+) True AMCG00000520
TU189714 other upstream 258195 16935993 ~ 16938282 (+) True G150750
TU189044 other upstream 3042637 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 3503888 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 4468574 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 5210762 11982460 ~ 11985715 (+) False AMCG00000352
TU189794 other downstream 43601 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 652011 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 915327 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 1040524 18542377 ~ 18565627 (+) True AMCG00000572
TU190785 other downstream 2467486 19969339 ~ 19972015 (+) True G151522

Expression Profile