RNA id: TU190355


Basic Information

Item Value
RNA id TU190355
length 202
lncRNA type inter_gene
GC content 0.65
exon number 1
gene id G151217
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18859263 ~ 18859464 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGACCCAAACCTGGCCACGTCAGTTAGTGACTCATCCTGGCTCCTCCGCTCTCAGACCTCAACAGCTGGTTCCCTCTGGGCTCCCGGACTGACCTGTGCTCCCCAGGACGCCCCCGTCTCTCAGGACACAGTGTCCGGCGCACAGGGCAGCCATCGTCCAGCTCCCGCCACAGTGAGACACACGGAAACTCGGCCGCTGTG

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG:

id description
ko00760 Nicotinate and nicotinamide metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190202 lncRNA upstream 328506 18489851 ~ 18530757 (+) True AMCG00000573
TU190136 lncRNA upstream 474217 18384600 ~ 18385046 (+) True G151052
TU190134 lncRNA upstream 498971 18359247 ~ 18360292 (+) True G151050
TU189989 lncRNA upstream 774576 18084460 ~ 18084687 (+) True G150953
TU189986 lncRNA upstream 777922 18078114 ~ 18081341 (+) True G150951
TU190357 lncRNA downstream 3560 18863024 ~ 18868044 (+) True G151219
TU190367 lncRNA downstream 60457 18919921 ~ 18921366 (+) True G151226
TU190511 lncRNA downstream 271161 19130625 ~ 19130890 (+) True G151310
TU190549 lncRNA downstream 445782 19305246 ~ 19307462 (+) True G151339
TU190812 lncRNA downstream 1189952 20049416 ~ 20049648 (+) True G151535
AMCG00000587 mRNA upstream 34585 18808614 ~ 18824678 (+) True AMCG00000587
AMCG00000569 mRNA upstream 169168 18678797 ~ 18690095 (+) True AMCG00000569
AMCG00000568 mRNA upstream 181149 18660117 ~ 18678114 (+) True AMCG00000568
AMCG00000578 mRNA upstream 200326 18654633 ~ 18658937 (+) True AMCG00000578
AMCG00000577 mRNA upstream 206745 18636125 ~ 18652518 (+) True AMCG00000577
AMCG00000594 mRNA downstream 26984 18886448 ~ 18923025 (+) True AMCG00000594
AMCG00000596 mRNA downstream 69202 18928666 ~ 18947466 (+) True AMCG00000596
AMCG00000595 mRNA downstream 90694 18950158 ~ 18991317 (+) True AMCG00000595
AMCG00000593 mRNA downstream 427709 19287173 ~ 19289424 (+) True AMCG00000593
AMCG00000605 mRNA downstream 523468 19382932 ~ 19387617 (+) True AMCG00000605
TU190212 other upstream 293636 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 439792 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 699942 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 1310755 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 1920981 16935993 ~ 16938282 (+) True G150750
TU190785 other downstream 1109875 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 1982474 20841938 ~ 20843463 (+) True G151676

Expression Profile