RNA id: TU190357



Basic Information


Item Value
RNA id TU190357
length 4846
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G151219
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18863024 ~ 18868044 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAAATTGTTTACAACAGTTCAAGAGTTTGTCCCCAATATGTGGAGAAATCTCTCTTGTGCAAATTTTATTATGCAGGCCAACAGTTAATGATTCTGGACAATCGTTCCACTAACATGGGCAACAGAAGGCAGATTAAACCAACgcaatgaacaaaaataaacaatcagagACCAAAatcaacagagagagagagagagagagagagacaggcgcTCTGTTTACAAGTTCtcttaaatattacaaaaacaaaattcagtCATTATAAGTGCAACCAGTACAGAATGAGCAGACCTTGTTAataattaaagacaaaacacaCGTTAAGTTGGAATGCACAACGGACCCATAAGTACTGATACATTATCATTTTTCTAAAACACATTCTACAGTTCATCCCGGGAGGCGGCCGGGGCCGAGCGTTGCGAAGCCAGGGAAGCAGCCCGGGGCCTCCAGCACTCCCGGACATAGACGCCGTCGCTTTTTTGTGTGGCGTTTGTTCTTTTACAGTAAAGGCACTGGGGTGTCAAGAGCAGAGAGGCTGAACGCGCCTCTGAACGACGGGGGTGAGagtccgttttttttttttttttttttggtcaatgTTACACTCCCAGACTCTCGAGTGGTCAAGTCACCGTCCCACTGGACAGTTTCGTTGAGTCTATTTCTTAATTTCAGAAGCAGTTAACACACGGTTGAACCGCACACAGTATGTACaaggagagacacacagagagagacaagagacacacacagacacagagacacagcgcATCACGACACCGAGGACCTGCGGGGTTTTCATCCCGGCGGGGCTGCAGGGTGCCAGACAAACCCACAATGGACTCGTTTtgGTCCTCAGACGTGACACAATACACTTAATTACACCTTAACAACACGGGGGCCCACCGGAGAGGGGgaagacacacacacgtacacatgACATGACAGAGACgtaaagaaaggggaaaaaaaactagaaaaacaacCTCGCACACAAAGCAAGCCTAGTCTCGGTCAGTGTGTTCTCTGAGCGTCAGCCCCTCTCCCCTTCCAGCGCAGCGCAGGACAGTGCAATTCGGTACATCCGGGGAGTAGGGGGGGGCACTCAGAGAACCACCACACAGACCCAGACCCGCCGGCGGGACAGAGTGGTTAGAGTCGACTACAATCGGATTCGAGGACAGCGATCTTCCTTGTGCAAAGGAAAGTTTCCAGAGcgtcaaaaataaaataaaacaatcataaaaataataattataatcttgTTATTTGCTATATTGACGTGTATAATTTATGTACCGCATCCACAGCAGCTTTGAGCGGTGGTTCTGGAAGAGAGATAGAGTCACATAAACCAGTAAACCATCACGGCCAGGGGTCTTGCTGCCAAAGTCTCCTGCCAGGCCTGTGAGAGTGTCCAGTAGCACAGGAAGttgtcccccctcccccccaggcAAAGGCCATGACGTCCCGGGTCAGTCGGGGGTCTTGGCACACGAGACGTCCCAGCTGTCCTACACCTCCCCCTTCCTGAGCGGCCCCTGTCCGGTCTCTATATCCCGGGAGCGCAGACAGCTCCATCCACAGGAAGTGCAGGCGTGCGGCCCAGGTCACGCACGGGGGAAGCAGGGGGAATAGGCGAGCGGCTGCCAGAACACCCAGCGCCGACACCTTCGAGACCTGGGGGGGGCTACTGGGAATCGTGAGAGATTAATCTAACGCCACTGGCCACGACTGCCTGAACAAAATGGCTTCTCTCCTATCAGTCTGTGTACATCTCTCTAGAATCTTGCGATTGAATCTTGCGATTAGACCCTATAAAGattccttttctatttttgtactttttggtTCTTCCCCCGCCAACAGCAAACTGAAACAGTCGAACGAGGCAGCCCTTTagaggtgtgggggggagggtaACTATAAAATAACATGCCGAGGACCCCCCTCAACCCCGCACCCTGATGCTCTCCCTCTTCCCTGGGGGGCTTCCTGTGCCCGACTGACCGCTGCCCCTTTCGaaccacagagagaaaaaaacgtCAACGGCCAGTGAGCGTCTCGTATCATTGGCAGGGTAGCCGATGCGGCCCCCCAAGCTGCACGGGGGTCCGTGTCCCGCCGGTTCGGTCAGCCATCAGAAATTCAGTTGGCGACTCAGATTTCATGAcgacaagaataaaaataatagtcattaaaaaatttaaaacatgaaaaaattataacataaaatgacaataaaattaaaataaacaggcacCCGAATCCGGTCAGTGATTGGCCCGTCGGGGGTGAAGTTCCGGTTCTCTGGCGCAGCAGTCACGgaagaaggagggagggagggacagacgGACGAGTGTCGGGCACAGAGTGGAAGGCCGGgaccggggtgggggggggtgtcagAACAGGTTGAGGTAGGTGAAGAGCGCGGGCACGAGGAAGAGCGCGTTGAAGCCCACGGTGCCGTAGACGATGTAGCGGTACGGCAGCTCCACCTCCATGCGCTGGCGGGCCAGGCGCACGTCCTGGCACGGCACGTTGAACAGCCGGCAGGCCAGCGGGATGGTCAGCGCCTTCATGACAGCGCGGGTGGCCAGCAGCACCGCCACGCCCAGCACGAAGCGCAGCCCCGCCATGCCCACCAGGGCAGCGCTCAGGGGCGGCGGGGTGAAGGGCAGCTGCGACGGCGGCGCGTCGGGCATCAGGCCCAGCAGGTAGTTGAGGTGCGAGGCGCAGGCCACGCCGGCCCCGGTGCCCAGGATCTGCGCCGTGTCGCCCCGGGAGGTGCTCCAGGTGTCCAGGGTGAAGGAGAACAGCCCCATGCCCAGGTgcaggctgatgatgatgagcGGCGCGTAGCGGAAGGTCAGGTTGAAGCGGTCGATCATGTCCAACGCTGGCTGGAAGGCCACCAGGATCACGATGCTGTACAGGAAGCCCACGATGACGTCCTGCAGGAGAGCACAGGGCAGCACGGGTCAACATGGGGCAGCACAGGGCAGCAAACAGGACAGGGAAGCAGAGCACAgaagacacacactcacacaaggaaaaacacgttcacacacacacacacacacagcaacacagagcagacgcgcacacacacggACAGTAACACAAGCCCTCTGACTCTCATTCTCACGCACTCTCTCGCTCACACACCCAAAACCGCAGCGGATTTGACCGTCTGATGCTCTGTTCAAAGCACCTGGCTAACGATCTACATTTGCGTCGCTATGCTGCAGTGGCCGCGGCTCAGAGAGACACTAACCGCGGAAAACCCCTCCAaccaaaaacattcaaatcccGCCCCACACACAACAGAGGCAAATGCTTTTCCATGAGCTCTGACAGATTATACAGATTATCTGACGCAAGCTGCCTGCTGGTGGTTTAGCCAGAGGGGCCTAAAATCCACCGTGAGTAATATCTACACCTGTCTTTCTTCCTATCTCTCTTTCCATGTGTGTTAAAGAACATAAAACCATAAGAACGCAACAAGAGTCGCAAAGGAAAGCGATCTATGGGTCTCAGCTGCTTGTAGGACCCTGGGGTGTGAAACAGTGCCTCCTGTCCTCGGTCTCAGAAGCACCATCTACTCATGTCCGCTCGTGTCCCCTGAGCTGATAAGCGTTCACAGCCACATGTAACTAGATTTAATTCCTCAGTTcagatatgtttttaatcagtAGACAATATTGCATCCTCAAACAGGTTGTCACAGTAAAGAACATGCTACAGAtttagtataataaataaatacaagaccCTACCGAGTCTGTGGGGCCTACAGAGCCTTGTCAACCGctcctctcacacacacacacctacccCCCTGCAAGAAATTATAAAACTCCAGTAGAAAATCCCTAAAGTTCAGGTCATGAGAGAGGACTGGAGCAGCAGGCAAATGCCCTGCCAGGTGCCGCCGCACGCACAGCTATTAGGCAAACGCTTTCCTCCACGCCGGCCGGCTGCCCAGAGCCAGGAGCCGCGACTGGGCGCGTCTGGTTTCCTGTCCTACTTTCTGAGCGAGTATTGGCAATTTAaatgaaactgattttaaacacGCTCTACTCTAACCGACTAACTGAGACCGGAACAGCACAGCTGTTTAGGTTCACCTAAAAGCATTGCTCCTTATTGGCTTTACTTCACTCTGTTCCCCTCACAGATGAACCCTGGCCGACGGCTGAGGAGCCAGAGTGTGACGGAGGCCCGTTACCTCACAGCGGCTCAGCAGGTACCACTTACAGCAAAGGCACTGCAATGCATGCTGGGCTACCGTCGAGTCATTTACCCCAACTGTGCAGTAGTGCAGTACGTTCACTCGAAGGACAGTGTCTTTCTTTtgacataaaaagaaaaaacactaaacaaaaacatttactcaACCAGGCGATTACACAACCAACAGCTCTGAGACCGAGTGGCACAAAGTGCCCATCCTCCTACAGGCTTTGTTTGCGGACGTGACGCAATACAGACGCTCAATCACGGAGCTCCTGAACTCCGGCAGCGTCGTGTGAACAAGGTCACCCCCCCGGGGGCTGCCTGGTGTGGATGTGCGGTTTTGTTTCCATACAAATAGGAAACCCGTCTCTGGGAGGAATAACAATGGAAAAACGCAAAGGAAGCTCTACAGTCCGTCCCCAGGGCTGATTCATTGGGCCCCCGGCTTGAACTCGACCCCCGAGGGGCCTCTGCCCTGAGATAAGACGGACGCCGAGAACAACAACGACTGCAGAATCCAGTTCTCCTTCCCCAGtgggagcggggggggggggcactcaCGCTTCCTCCCCTGTGACGGGAAACACAGCCATCCTGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU190355 lncRNA upstream 3560 18859263 ~ 18859464 (+) True G151217
TU190202 lncRNA upstream 332267 18489851 ~ 18530757 (+) True AMCG00000573
TU190136 lncRNA upstream 477978 18384600 ~ 18385046 (+) True G151052
TU190134 lncRNA upstream 502732 18359247 ~ 18360292 (+) True G151050
TU189989 lncRNA upstream 778337 18084460 ~ 18084687 (+) True G150953
TU190367 lncRNA downstream 51877 18919921 ~ 18921366 (+) True G151226
TU190511 lncRNA downstream 262581 19130625 ~ 19130890 (+) True G151310
TU190549 lncRNA downstream 437202 19305246 ~ 19307462 (+) True G151339
TU190812 lncRNA downstream 1181372 20049416 ~ 20049648 (+) True G151535
TU190815 lncRNA downstream 1248454 20116498 ~ 20116788 (+) True G151538
AMCG00000587 mRNA upstream 38346 18808614 ~ 18824678 (+) True AMCG00000587
AMCG00000569 mRNA upstream 172929 18678797 ~ 18690095 (+) True AMCG00000569
AMCG00000568 mRNA upstream 184910 18660117 ~ 18678114 (+) True AMCG00000568
AMCG00000578 mRNA upstream 204087 18654633 ~ 18658937 (+) True AMCG00000578
AMCG00000577 mRNA upstream 210506 18636125 ~ 18652518 (+) True AMCG00000577
AMCG00000594 mRNA downstream 18404 18886448 ~ 18923025 (+) True AMCG00000594
AMCG00000596 mRNA downstream 60622 18928666 ~ 18947466 (+) True AMCG00000596
AMCG00000595 mRNA downstream 82114 18950158 ~ 18991317 (+) True AMCG00000595
AMCG00000593 mRNA downstream 419129 19287173 ~ 19289424 (+) True AMCG00000593
AMCG00000605 mRNA downstream 514888 19382932 ~ 19387617 (+) True AMCG00000605
TU190212 other upstream 297397 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 443553 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 703703 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 1314516 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 1924742 16935993 ~ 16938282 (+) True G150750
TU190785 other downstream 1101295 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 1973894 20841938 ~ 20843463 (+) True G151676

Expression Profile