RNA id: TU190549


Basic Information

Item Value
RNA id TU190549
length 1920
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G151339
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19305246 ~ 19307462 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgttttaccagtttgtgatttttttattatttcgtAAGTCTCAAACACTTATAAGAAACAATGATAAAGAAAGCAATATTCAAACACAAGTGTTTCGACAATATGCTTCATATCTCGCCAGCATTGCTGTCCAGCATGCAACCTTGGcattacacagtttattttgttaatacaaagacatttgaaatgtattttacatagtCTGTGAAGTGTGCTCATGTAATTTACACAAGGAATTAAAGAATCATATTCCGGTATCATACACATCGATCTGGGGTCAGAGTATTATAAACAGAGCAAAGTTCAGTAGCAAAGACCAATTATTTCCTCGCACAGATATACACACCCCAAGTCTTTGCTTCTCCCTTGGACGTGCATCTGGTCAACATTTGCAGGAGTCAAAACGAGTCAGGGTGTGACAATGATCCACACACACCTTTTTCCCAACACGTctgtaaatatagtttttaacACTCAGTTCAGACTTTCAGGTCGCAATGTGTCAAAGATGgggattattttaattggtttgtttGGGGGACTGAACTGGGACAGAATAGGCCTGGAATATTATTACAATGACAAAACATACAGCCACAAATTAACAGTTCTGTATAACCATTAGCATCATGTAATCTACATCTATGTTATACTTTAGTCCCCCATCATATCACAGCTTTTTCAGCCATCTGTAACAACACATGCTCCCGTCTTACAGAAATCTGAACGTAACAGTGTCTAACCATACACTTTAATgacaataaataacaacaaacacattcattgGTCTGAATTAAACTCCCTCTTACAAACCGTAAACGTCATTTAAAATTTCCGAAGCAAGATCGTGcgctctctcttttttaaaggGACCCACTATTCGATTGCAAGCAGTAAGTGCAAACAACTGCAGTAGTTGAGAAGGGATTGAAGTGTTAAGTCTGACTGGGGGTCGAGGGTAGTAAATGTAGTGGCAAGTGTTtacttaataaaaaatgaaaatttaaaaagtgtgaaaagGTGTTTTAGAGTACATATTTACAAAGTATAGTACAATTGAGTTTCTCACAGTTTGTACCAAACTTGTAGTGGGAGAAATGGGTGACGAAACCTTTTCCACAAGAAGGCACAATAAGATTTGCAGACCTCTATCACGGTCGACTCATTTCTTGATATTGAATGATTCCGCACTAATCCGCATTATATGCAATGCTTTGACAAGTGGCAcagctaaataaatatttcaaaataaacggGGAGGGTAAAATCTAATTCTCATCAAAAGTCATTGCACATCTTacaagttaattaatttaaaaatacacaacatgCAAAAACGTATGTACACGTTATGTCCACTATTTGCGATTTATCTACAATATAGCCTTTCAAAGACTACACGAATTGCCATCTGTAAATCAATTGGCCAggtctgatgtttttttaacaggttTCACTGCTGCAAACTTTATACAGTTCTAACACAGGGATAAACAGCGCAGTCATCCAGTTTCACACATACTCCTGcttGTAACGTAAGAAGTCAAATCCTTCTCTGAACAAGACGGAGGGAGTGAGAAGCGCAGCAAAGGTTAAATGGGCAAAAGTTTCGGCGGAAAAGATCCATGGCAATTCCACAGGGTCATATGTGTGTTCAGAAATCAGAGGACATTGCCCACGGCCCACAATGCACCTTGCTCTTCAGTAAAAACGTAGAACTTCACAGCTTCATCCTTACGAAAGAGAAAGCCGCGGCCAGTACCATCGGTGCAGTATGTACACGCcaacaacaataatgtacaGCAGTGCCGTAGTGTACAGGAAAATACTACTCTTTGTATCTAATGAATATGCACAGGGTTTCTGAACACGGCTGTGATCCAGTCACATCATGTGGAGCAGCTCCGGTCTTGAGATGTc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190511 lncRNA upstream 174356 19130625 ~ 19130890 (+) True G151310
TU190367 lncRNA upstream 383880 18919921 ~ 18921366 (+) True G151226
TU190357 lncRNA upstream 437202 18863024 ~ 18868044 (+) True G151219
TU190355 lncRNA upstream 445782 18859263 ~ 18859464 (+) True G151217
TU190202 lncRNA upstream 774489 18489851 ~ 18530757 (+) True AMCG00000573
TU190812 lncRNA downstream 741954 20049416 ~ 20049648 (+) True G151535
TU190815 lncRNA downstream 809036 20116498 ~ 20116788 (+) True G151538
TU190817 lncRNA downstream 845653 20153115 ~ 20153540 (+) True G151540
TU190834 lncRNA downstream 1231610 20539072 ~ 20540211 (+) False G151557
TU190835 lncRNA downstream 1231610 20539072 ~ 20602476 (+) True G151557
AMCG00000593 mRNA upstream 15822 19287173 ~ 19289424 (+) True AMCG00000593
AMCG00000595 mRNA upstream 313929 18950158 ~ 18991317 (+) True AMCG00000595
AMCG00000596 mRNA upstream 357780 18928666 ~ 18947466 (+) True AMCG00000596
AMCG00000594 mRNA upstream 382221 18886448 ~ 18923025 (+) True AMCG00000594
AMCG00000587 mRNA upstream 480568 18808614 ~ 18824678 (+) True AMCG00000587
AMCG00000605 mRNA downstream 75470 19382932 ~ 19387617 (+) True AMCG00000605
AMCG00000604 mRNA downstream 84312 19391774 ~ 19409778 (+) True AMCG00000604
AMCG00000606 mRNA downstream 112326 19419788 ~ 19444709 (+) True AMCG00000606
AMCG00000610 mRNA downstream 160005 19467467 ~ 19470302 (+) True AMCG00000610
AMCG00000612 mRNA downstream 232089 19539551 ~ 19542191 (+) True AMCG00000612
TU190212 other upstream 739619 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 885775 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 1145925 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 1756738 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 2366964 16935993 ~ 16938282 (+) True G150750
TU190785 other downstream 661877 19969339 ~ 19972015 (+) True G151522
TU190974 other downstream 1534476 20841938 ~ 20843463 (+) True G151676

Expression Profile