RNA id: TU190785


Basic Information

Item Value
RNA id TU190785
length 2677
RNA type TUCP
GC content 0.54
exon number 1
gene id G151522
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19969339 ~ 19972015 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATAAAAGACATTTATTTCATATCTCAATtgcaaaatagtgttttttacATACACATTTGGTCACACACAGTAACAGACTTGGAATTAGACATTTACAGACTGgccagtaataaataaataatggcaagCAGGTAACTACAATCTCCAGTGCCAACAAAACATGGGGTTCAAACAAAAACGTGTTAAGGCTTTGGATCAATAAGCATACACCCGcttatctgaaaaaaaacaaccaaaaaaaacttatttttggGAAATATGGATTGAAAGATTTTGTCGTTGTGCTTTAGTTAATACATCATTGGCATCAAGTATCTCAAAATACTGCATCGGAGGGGTCTGTACTGTAGCGACAAAAGACAAAACCGGTTCCTTATCTACAATCACACACAAGAAATATAGGCAAATGGGAACAGAACTGGTCACAAGATACAATTGTATAACTAAAGCTTACCATTTAGGTTTTGCATGAAGTATTGTAGTCAAAAGCAAAAGCACTGTATATTCTGCACATCTGGACTCTGCTACTCCGCTATGGGCGTTAATGAAATCCGTGCAAACATCCCTCTGAAGGGGTTAAACAAAAATACGAAGGTAAAGGTCGGGTGACGCAACTGCGGCCTTTATGTCAATCAGAAAGTTGTGCAGCGACGTCTATGTGACGTGGGGCGAACGTTTGATTTCTGCACATCtgtcaatcaatacaaaagaaTCCAGATGTGGCCGGCGATTGCGACACCTGGACTCTCATCGTCTGGACACGTCTTTTATTTTTCCGTGTATTGTCCAAAAATAACTACCATGATACACGTCTTTCTAATACAAACAGCCTGCAAAAATGTCAGCGTGAATGGGAGAGGAGGGTTTTCTAAAATCTATTTTTGTTCACAGTGTACGACAGTGTGCAACTGCATATTGGCACTTGAAAAGGCTTGGTTTGTACCCCAACCACTTACCACCATATCTCAGTCACGATGATGATTATTTCCCATAGCTTAATGGCCAGGCAGCTGAGGAGATTATTATACTCTCgggtatatagatatatttggCACAGTTCCCAAATGTTTCCCTTCCAGGCGAGCCGTGTATAAATCCCCCCGATGGTGGCCCGCAGCTCATGCCCACGTTGCCCTGTTAAAGGCTGGTATCTGCAGTCTCGGATTTGGGCACAGCCGGTTCCGACAGCGTGTCCGGCTGCCCGTCCCGGCAGAACAGCACCGCGGGGTTCTTGCAGGCCCACATGGCCACGTCCCCACCATTGGCCGGACTGGAGGAGGACAAGCGACTGCCCGCCCCGTGTCTGTTCACATACCGGTCTCTAATCCGGTCGGCCCGGGTCCTGGCCTCCCGGCTCTGGCTCTGCGTGGACAGGTAGGCGGCGATGTTTCTAGTCCTGTACCCTTCCTCCCTGTTGCGCCCCAGGAGCATGGAGATGTTGGGGTTCCTCAGGGCGTAGATGAGCGGGTTGATGGCCCCGTTGGCCCACGCCATCCAGATAGCCACGGTGTCCATGACGGGGCTGAAAGGGTAGTCCCCCACGGCGGTGATGATGCCCATGACACAGTACGGCCCCCAGCAGAAAATGATGAAGACGATCATGATCAGCACGGTGGTGGCCGTCCTCATCTCGCTGTAGAATCGCAGCAGGTGCGCATAGGTGGTCACCGGCCGCACCCGGATCTCGGACAGCCGCACCGTCTTGCAGATGTTGTAGTGGCAGAAGCACATGAGGGCGAAGGGCAGGAGGTAGCAGACCACGATCAGGGAGATGCTGTAGGCAGTGCCCATCCTGGAGGTGCTGGAGTGAAAGACGTACATGCAGTGGTAGAAGCCCCTCTTGTGGACCACCAGGGTTTCGGAGGGGGGCACCAGCACGTCCCAGGGGAAGGAGAAGAGCACGGCGCTCACCCAGACGGCCACCAGCAGCTGCGTGGCCTTCCTCCTCCCGATCTTCTCCTGGGGCTGCCTGACGATGGCGTAGTAGCGGTCGAAAGAGATCAGAGTCATGGTCAGGGTGGAGATGATGCCGAAGCAGGTGTTGAAGAAGCCATTGGCCACGCAGAAGCAGTCCCCGAAGATCCAGCTGCCGTCCCGGCTGAAGAGCATGATGAAGGAGAAGGGCAGACACAGCACGGCCGTGAGGAAGTCGGACAGCGACAGGGACATGATGAAGGCGTTAGTGACCGTCCGCAGCTGCCGGTGTTTGATGATGACGATGACCACCGCCGCGTTTCCCAGGCtggagaggaggaagatgaggaggaggatgagggcTTGCGCGGCCACTGCGATGCCGTGCAGAAGGGAGCTGGGCTCGGCGTCCTTTCCGGGGGCAGAGTGCCGGTCCTGGTCGGCTCCGCGGCCGCTCTGGTTGCCGGTGCCCAGGTGGGTGCTGAGGCTGGCCGGCGCCGGGGTGGGGGTGAGGATGTCCAGCAGCAGCTCTCTCCCCGAGGTgttgccgccgccgccgccgccgagcAAAGCAAGGCTCATAATCACAGACAAATCCATCCGGCTGGTGTGGGGGGCATGCACGGAATGCAGGCGGACGCATCACCTCATGCGAGCCGAGCGGCGCTTGAGGAGACACGGCGGCGGTGCAGGAGCTGCGTCTCGGCGCTGCGGTGTCGCCGGCCTGCGCGCCTCTCTGCAGCCCCTCCGATGCACCCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190549 lncRNA upstream 661877 19305246 ~ 19307462 (+) True G151339
TU190511 lncRNA upstream 838449 19130625 ~ 19130890 (+) True G151310
TU190367 lncRNA upstream 1047973 18919921 ~ 18921366 (+) True G151226
TU190357 lncRNA upstream 1101295 18863024 ~ 18868044 (+) True G151219
TU190355 lncRNA upstream 1109875 18859263 ~ 18859464 (+) True G151217
TU190812 lncRNA downstream 77401 20049416 ~ 20049648 (+) True G151535
TU190815 lncRNA downstream 144483 20116498 ~ 20116788 (+) True G151538
TU190817 lncRNA downstream 181100 20153115 ~ 20153540 (+) True G151540
TU190834 lncRNA downstream 567057 20539072 ~ 20540211 (+) False G151557
TU190835 lncRNA downstream 567057 20539072 ~ 20602476 (+) True G151557
AMCG00000621 mRNA upstream 1676 19931968 ~ 19967663 (+) True AMCG00000621
AMCG00000614 mRNA upstream 164140 19796784 ~ 19805199 (+) True AMCG00000614
AMCG00000620 mRNA upstream 295444 19664561 ~ 19673895 (+) True AMCG00000620
AMCG00000616 mRNA upstream 325994 19624419 ~ 19643345 (+) True AMCG00000616
AMCG00000617 mRNA upstream 354459 19610030 ~ 19614880 (+) True AMCG00000617
AMCG00000622 mRNA downstream 7163 19979178 ~ 19980678 (+) True AMCG00000622
AMCG00000626 mRNA downstream 578044 20550059 ~ 20570923 (+) True AMCG00000626
AMCG00000637 mRNA downstream 714070 20686085 ~ 20694291 (+) True AMCG00000637
AMCG00000634 mRNA downstream 731673 20703688 ~ 20734204 (+) True AMCG00000634
AMCG00000648 mRNA downstream 837142 20809157 ~ 20810026 (+) True AMCG00000648
TU190212 other upstream 1403712 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 1549868 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 1810018 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 2420831 17545454 ~ 17548508 (+) True G150811
TU189714 other upstream 3031057 16935993 ~ 16938282 (+) True G150750
TU190974 other downstream 869923 20841938 ~ 20843463 (+) True G151676

Expression Profile