RNA id: TU190974


Basic Information

Item Value
RNA id TU190974
length 1526
RNA type TUCP
GC content 0.60
exon number 1
gene id G151676
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 20841938 ~ 20843463 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACAGCAGGAAAGGTCCTGTACAATCCTGAAGATGAACCAAAACGTCATTAACTTATGAGCAAATATTATTCGTTAATCTTCCATACTGGTGCTTTAAACTCTGGCCTGAAACACAGATACCCCGATCAGGGCCGATTCACTTAtcactgccccccacccccacctggCAGACAGCAGTCATTCAAAGTGGAACTCCTTTAGGTTCCCCTTTAATATCGTGTTTTATATCGATTTATCAGGTATCATGTCAATCGAGTTGCATGATGCGACTTTAGCTCAACAGCAACCTAAACAATCACCTCCCAGAGCATTATGCTCTTCTCGTTTCCGATTTAAACAGCCCTTCTGCTCACCTTCGTGTCTTCTGGTCCTGACAACGGTGCCGATTCTGTGGCTGTTGCGATAACAGTCTCTGCCGTAACACCGGGCCCCGCCTTGGGCCTCTCGCTATCTGCGGTCTGTGGTGCCGTGACCGGCGTCAGCGCGGCCCGTCCATCTGTCTGCGGGGCCGTGACCGTGGTGGTGCCCCCTGCCGAGAGAACTGCTCCGGACCCCACAGCAGGGCCCCTGACCTCCTGGTTTACGGGGCCCCCCGAGCCGGGCCCCTTCTCTCCGTGTGCGGGATTGAGCCTGTAGTGTCTGGACAGGCCCCCCCGCCCGATGTAGGCCTTCTCGCACGTCTCGCACTTGAAGGCCTTGGGGTTGAGGTTAAAGTTAATGGCCCCCGTGTCGCCACCGCGCTCCCCCGGCCCCCCGGCCactctgtcctcctcctcctcctcctcctccacgcTGATCTCAGAGTAGTCGTCCGAGTCAGAGGGGTGGCCGTCGGCCAGGTCCTCCCTCTTGATGAACTTGTAGTCCTTGACCTTGTACTTGGGCGGGCGGGAGATCCGACCCGAGCGCGTCTTGATCTTCTGTGGCTTCTTCTCACGCTCCTTCTCCTTCTGCCTCTCCTTCCGGTCCAGCGCCCCCGAGACAGACCCCGAGCCTGGGGCGCCAGACACCACGGCCACCCCCCCGCCCTTCCCCGGTCTCCCGTTCAGCGACGGCTTGGCGGGCAGCCTACGTGGTGCGGTGGAGGCGCCCTCCGCCGTTGGCACCCGCCTCTGCACCAGCAGCTGGATGGGGGGCTCGCCAGAGCCGCTGTGCAAGAAGaactgctgctgttgctgcgaTTGCTGCGGCCCCCCAGTTCCGGGGAAGGGCTGGATACGGATGATCTGGGGGCTGCCGATGCTGAGTGCCGGCGATACGCTGACCCGGGTGGTGGACTGGCTCACCGCCGAGACACTCCTCTGCTGGAACATGGCAAGGGGTGGCATGGGCCGCTCTGGGGGCTCCGGGGCCGAGAGGTTCTTCACCTGGATGCGGATGGTCTCCAGCTGCTGGGGGAGAAGATGGGAGCGTCTTGAGGAGGAACAGCAGGGGTCATTCAATAGCATCAACAAGTCCACAGGCCTGACCGTAAACACGCCACACTGCCGGACTGTCACTGGTGTGTTGTCAACAAACTcaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190973 lncRNA upstream 446 20841255 ~ 20841492 (+) True G151675
TU190959 lncRNA upstream 29648 20811450 ~ 20812290 (+) True G151661
TU190835 lncRNA upstream 239462 20539072 ~ 20602476 (+) True G151557
TU190834 lncRNA upstream 301727 20539072 ~ 20540211 (+) False G151557
TU190817 lncRNA upstream 688398 20153115 ~ 20153540 (+) True G151540
TU191004 lncRNA downstream 26721 20870184 ~ 20870411 (+) True G151702
TU191008 lncRNA downstream 73687 20917150 ~ 20917870 (+) True G151706
TU191010 lncRNA downstream 74479 20917942 ~ 20918538 (+) True G151708
TU191011 lncRNA downstream 75236 20918699 ~ 20919400 (+) True G151709
TU191062 lncRNA downstream 297723 21141186 ~ 21141460 (+) True G151752
AMCG00000643 mRNA upstream 3658 20836579 ~ 20838280 (+) True AMCG00000643
AMCG00000648 mRNA upstream 31912 20809157 ~ 20810026 (+) True AMCG00000648
AMCG00000634 mRNA upstream 107734 20703688 ~ 20734204 (+) True AMCG00000634
AMCG00000637 mRNA upstream 147647 20686085 ~ 20694291 (+) True AMCG00000637
AMCG00000626 mRNA upstream 271015 20550059 ~ 20570923 (+) True AMCG00000626
AMCG00000642 mRNA downstream 11628 20855091 ~ 20869738 (+) True AMCG00000642
AMCG00000650 mRNA downstream 35856 20879319 ~ 20917145 (+) True AMCG00000650
AMCG00000654 mRNA downstream 77255 20920718 ~ 20921397 (+) True AMCG00000654
AMCG00000641 mRNA downstream 395250 21238713 ~ 21239930 (+) True AMCG00000641
AMCG00000649 mRNA downstream 626380 21469843 ~ 21477418 (+) True AMCG00000649
TU190785 other upstream 869923 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2276311 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 2422467 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 2682617 18153864 ~ 18159321 (+) True G150976
TU189794 other upstream 3293430 17545454 ~ 17548508 (+) True G150811

Expression Profile