RNA id: TU191010



Basic Information


Item Value
RNA id TU191010
length 597
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G151708
representative True

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 20917942 ~ 20918538 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGCGGGATAAGCTTACCTGGTGCGTGATACTCCCTGAAGGAGGTGTTGGTGAGAGGGAAGTGAAGCACGATGGGAACTCGGGGGTCATCGTCCTTGAACACGTAGCACTCCTGCAGGGGGCGGCCCTCCAGGCTGCTGAAGTCGATGTGGGGGAAGGGCAGTTTGTGGTCCCGGCAGTACTGCGCCGTCAGCTTGAGGTCCTGCAGGGGACGAGCCCAGAGACAAGAAGGCTGAAGACAAAGACACAGCCAGAGCTGTGCAAAACAGCTGTGTCACTTTGGGACACATCTGGGATTGTGCAGCACTTTTGTGAAGAGGACGGAGTGATTTAATCTCCTGTAAAAGGGGTCTCTGCCTGGCCAATGTCCTCCGTTCAGCCCTACCCTTCCCCTGCACTGTCCAGCCCCACTTAGTCCACCTCAGTTACCTTGAACTGGTCCCCCCAGGTGAAGTTGAAGGACAGGATGACGTTGACGCCCCGGTGTGGCCTCACCAAGGGAGGGAAGCCGGTGTTGATGGCAAATCCCGAGTCCACCAGGTGCAGGCAGGTGTCCGAGGGCGTCAGGTCATTGGGGAAGGCATCAGGGTGCGTCTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU191008 lncRNA upstream 72 20917150 ~ 20917870 (+) True G151706
TU191004 lncRNA upstream 47531 20870184 ~ 20870411 (+) True G151702
TU190973 lncRNA upstream 76450 20841255 ~ 20841492 (+) True G151675
TU190959 lncRNA upstream 105652 20811450 ~ 20812290 (+) True G151661
TU190835 lncRNA upstream 315466 20539072 ~ 20602476 (+) True G151557
TU191011 lncRNA downstream 161 20918699 ~ 20919400 (+) True G151709
TU191062 lncRNA downstream 222648 21141186 ~ 21141460 (+) True G151752
TU191091 lncRNA downstream 569194 21487732 ~ 21529378 (+) False G151775
TU191092 lncRNA downstream 609052 21527590 ~ 21567174 (+) False G151775
TU191097 lncRNA downstream 610860 21529398 ~ 21533538 (+) True AMCG00000661
AMCG00000650 mRNA upstream 797 20879319 ~ 20917145 (+) True AMCG00000650
AMCG00000642 mRNA upstream 48204 20855091 ~ 20869738 (+) True AMCG00000642
AMCG00000643 mRNA upstream 79662 20836579 ~ 20838280 (+) True AMCG00000643
AMCG00000648 mRNA upstream 107916 20809157 ~ 20810026 (+) True AMCG00000648
AMCG00000634 mRNA upstream 183738 20703688 ~ 20734204 (+) True AMCG00000634
AMCG00000654 mRNA downstream 2180 20920718 ~ 20921397 (+) True AMCG00000654
AMCG00000641 mRNA downstream 320175 21238713 ~ 21239930 (+) True AMCG00000641
AMCG00000649 mRNA downstream 551305 21469843 ~ 21477418 (+) True AMCG00000649
AMCG00000657 mRNA downstream 559381 21477919 ~ 21507190 (+) True AMCG00000657
AMCG00000658 mRNA downstream 590836 21509374 ~ 21514322 (+) True AMCG00000658
TU190974 other upstream 74479 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 945927 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2352315 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 2498471 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 2758621 18153864 ~ 18159321 (+) True G150976

Expression Profile