RNA id: TU191091


Basic Information

Item Value
RNA id TU191091
length 1855
lncRNA type read_through
GC content 0.46
exon number 2
gene id G151775
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21487732 ~ 21567174 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CtgcagaacaaaacacacaggatATAAAATGTGTGAGGAGGCATACATGTTTATTGCGGGGTTTTTTTCAGGTACaccatttaatatttattatagacattttatatacatgacTTTGCAACAGCTGTACTTCTGCTATGTGGTACAATCGTTAAAATTTCACTGATTCAtagtttgtaaaacaaaaaccttacAAAACTCATCAAAACTCGCAAACTGAtcagaaatcttttttttttgtgtggaagaCTAGAAAAAATACTTCATTGTATTAATCATgcattacacaaacaaaaaaatatcttgTTACACCATAAACTGAAgcgttttttaaaaataaaataatgacagcGGGGAAGTCGCAACCCAGACCGGACAGCTGGTGAACCGTGGTGTGCGTGGGAAGACGCCACTGCGATTCCCCgagttgaaacaaaaaaacgaaactaaaactctctctctctctccatccctccctccgtTTTCTAGGATCTTCCTGCAGTTTACGGGGCCAGATCAGTCCCCACTATGAGATAAACAATCTTGGTTTGCACTTAAAATCAGCGGTTTCTATGAACTTGTGGTCTTCGTTTGCCGTTCGCCTGCCGGAGCCCCATCCTGGACAGAGTCGCCCCCGTTCCTTCGCGCtcaattcacaaaataaaaaaggactaAACAGaaggtgaaataaataacaggccAATAGCATTAAGATGTCTAACCCGTGATAAATAAACTTGTAAATACAGTAAGATGTACAAAAATATCACATAGTGATAGGATGCTgcgatttatttttaaaagagttCGCAGGGAGAACTGGAACtccgtttttatttttctttacttaatTGGTTTCCTAAAGTCCTCAATCGATGGATAAAGACGGTTTTAAAGCAACGTGAGAAATAGCATCCGTACGTTTGCACGAGCCGAGGTCTCGGAGATGTCGGGGGTCCGGGGGGTCTGTGAGCCGGGTCTCTGCGGATAAAActctggtctttttttttttcttttttctttttttaaacaaacattttgagCCGTGACAGGCCTGTTGTATATAAAAAAGCTTATAAAAActagaattttgtttttttcttgaacgcaaaaaaaaaaaaaaaaaatgtttcatgaaaCTAATGCTAAAATATTTAGTCAATTTAAaacgttttcattttttccccataaTGCTAGACGATTCAGAGGGCCGCTCGTGAGCTCGTTAACCAACTGACGGACGCCGACCGGATCGTGCCGCTGAGCCGTGAGCTCACCGCCCCGAGCGGCACCACGGCCCGGTCCCTAAGGCCGCACAGAGTCCAGACAGACCCGGGTACAAATCAGACGCCACGTTCACTCAAATACACCTACATAACAGATATCAGCTCGGTTCAAACCCAGTCAAGGCTACAAATACTGGTTTCCTGCTTTAACTTACAGTAATTACAGTTAAATGAATtagtttgaaattattttattcaaagacGCTGCCGAGAACCCCGCCTCCCGGTTCCTCCCCCGTCCGGCTGCTGGGCCCGGCGGAGGGGCCGCCCCGATGTAGTGTCTGAACGGCGCGGGTGGCTCGGGGTGCAGGCCTCTCCTCCGTGTCTCACCTGCGGGTTCAGGGGGCGGGAGGTGCGGCTACACGAACACCTTGGCCAGGGCGTCGGCGCCGGCGCTGGCGATGTACGCCTTGGACGGGTGGAATGCCACGTCATAGATGGACTCGTCCGACTTCTTCCGGTGGGCTGTGATCTCCTGGACGCAGGTCTTGCTGTCAAGGTTCCAGAGCCGGATGGAGCAGTCGTggcctgggggtggggggggggagagagagacgtgaGGAGGCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191062 lncRNA upstream 346272 21141186 ~ 21141460 (+) True G151752
TU191011 lncRNA upstream 568332 20918699 ~ 20919400 (+) True G151709
TU191010 lncRNA upstream 569194 20917942 ~ 20918538 (+) True G151708
TU191008 lncRNA upstream 569862 20917150 ~ 20917870 (+) True G151706
TU191004 lncRNA upstream 617321 20870184 ~ 20870411 (+) True G151702
TU191097 lncRNA downstream 20 21529398 ~ 21533538 (+) True AMCG00000661
TU191101 lncRNA downstream 6853 21536231 ~ 21542398 (+) True G151782
TU191090 lncRNA downstream 29472 21558850 ~ 21567174 (+) True G151775
TU191123 lncRNA downstream 66460 21595838 ~ 21598156 (+) True G151804
AMCG00000649 mRNA upstream 10314 21469843 ~ 21477418 (+) True AMCG00000649
AMCG00000641 mRNA upstream 247802 21238713 ~ 21239930 (+) True AMCG00000641
AMCG00000654 mRNA upstream 566335 20920718 ~ 20921397 (+) True AMCG00000654
AMCG00000650 mRNA upstream 570587 20879319 ~ 20917145 (+) True AMCG00000650
AMCG00000642 mRNA upstream 617994 20855091 ~ 20869738 (+) True AMCG00000642
AMCG00000660 mRNA downstream 29135 21558513 ~ 21565648 (+) True AMCG00000660
AMCG00000671 mRNA downstream 107372 21636750 ~ 21650005 (+) True AMCG00000671
AMCG00000662 mRNA downstream 154237 21683615 ~ 21687385 (+) True AMCG00000662
AMCG00000665 mRNA downstream 158737 21688115 ~ 21701292 (+) True AMCG00000665
AMCG00000664 mRNA downstream 182312 21711690 ~ 21716183 (+) True AMCG00000664
TU190974 other upstream 644269 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 1515717 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2922105 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 3068261 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 3328411 18153864 ~ 18159321 (+) True G150976

Expression Profile