RNA id: TU191092


Basic Information

Item Value
RNA id TU191092
length 1354
lncRNA type read_through
GC content 0.42
exon number 2
gene id G151775
representative False

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 21487732 ~ 21567174 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGGTACaccatttaatatttattatagacattttatatacatgacTTTGCAACAGCTGTACTTCTGCTATGTGGTACAATCGTTAAAATTTCACTGATTCAtagtttgtaaaacaaaaaccttacAAAACTCATCAAAACTCGCAAACTGAtcagaaatcttttttttttgtgtggaagaCTAGAAAAAATACTTCATTGTATTAATCATgcattacacaaacaaaaaaatatcttgTTACACCATAAACTGAAgcgttttttaaaaataaaataatgacagcGGGGAAGTCGCAACCCAGACCGGACAGCTGGTGAACCGTGGTGTGCGTGGGAAGACGCCACTGCGATTCCCCgagttgaaacaaaaaaacgaaactaaaactctctctctctctccatccctccctccgtTTTCTAGGATCTTCCTGCAGTTTACGGGGCCAGATCAGTCCCCACTATGAGATAAACAATCTTGGTTTGCACTTAAAATCAGCGGTTTCTATGAACTTGTGGTCTTCGTTTGCCGTTCGCCTGCCGGAGCCCCATCCTGGACAGAGTCGCCCCCGTTCCTTCGCGCtcaattcacaaaataaaaaaggactaAACAGaaggtgaaataaataacaggccAATAGCATTAAGATGTCTAACCCGTGATAAATAAACTTGTAAATACAGTAAGATGTACAAAAATATCACATAGTGATAGGATGCTgcgatttatttttaaaagagttCGCAGGGAGAACTGGAACtccgtttttatttttctttacttaatTGGTTTCCTAAAGTCCTCAATCGATGGATAAAGACGGTTTTAAAGCAACGTGAGAAATAGCATCCGTACGTTTGCACGAGCCGAGGTCTCGGAGATGTCGGGGGTCCGGGGGGTCTGTGAGCCGGGTCTCTGCGGATAAAActctggtctttttttttttcttttttctttttttaaacaaacattttgagCCGTGACAGGCCTGTTGTATATAAAAAAGCTTATAAAAActagaattttgtttttttcttgaacgcaaaaaaaaaaaaaaaaaattctcatcAGAGCACagctgggatttttttttttgtttttttttttgtttttttttttgtttttccttcctgcaacaaaacacaaccGGCTCCTCCTCCAGGATCGAGTTCAGCtccgtctgtccgtccgtcCTCGGGTTGCGCCGGCGGCTCAGTTCAGGTGGAAGCCCTTCTCCATGGTGGCGGCCAGCAGCCGGTCCCTCATGATCTCCTCTGAGGAATACTCGGGCAGCTTCAGGTAGTGCACACACGTGTTCACCGACGGGTAGCTGGAGTCTGTGGCGTCCACCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191062 lncRNA upstream 386130 21141186 ~ 21141460 (+) True G151752
TU191011 lncRNA upstream 608190 20918699 ~ 20919400 (+) True G151709
TU191010 lncRNA upstream 609052 20917942 ~ 20918538 (+) True G151708
TU191008 lncRNA upstream 609720 20917150 ~ 20917870 (+) True G151706
TU191004 lncRNA upstream 657179 20870184 ~ 20870411 (+) True G151702
TU191123 lncRNA downstream 28664 21595838 ~ 21598156 (+) True G151804
AMCG00000659 mRNA upstream 1112 21516642 ~ 21526478 (+) True AMCG00000659
AMCG00000658 mRNA upstream 13268 21509374 ~ 21514322 (+) True AMCG00000658
AMCG00000657 mRNA upstream 20400 21477919 ~ 21507190 (+) True AMCG00000657
AMCG00000649 mRNA upstream 50172 21469843 ~ 21477418 (+) True AMCG00000649
AMCG00000641 mRNA upstream 287660 21238713 ~ 21239930 (+) True AMCG00000641
AMCG00000671 mRNA downstream 69576 21636750 ~ 21650005 (+) True AMCG00000671
AMCG00000662 mRNA downstream 116441 21683615 ~ 21687385 (+) True AMCG00000662
AMCG00000665 mRNA downstream 120941 21688115 ~ 21701292 (+) True AMCG00000665
AMCG00000664 mRNA downstream 144516 21711690 ~ 21716183 (+) True AMCG00000664
AMCG00000666 mRNA downstream 180173 21747347 ~ 21753688 (+) True AMCG00000666
TU190974 other upstream 684127 20841938 ~ 20843463 (+) True G151676
TU190785 other upstream 1555575 19969339 ~ 19972015 (+) True G151522
TU190212 other upstream 2961963 18542377 ~ 18565627 (+) True AMCG00000572
TU190161 other upstream 3108119 18417180 ~ 18419471 (+) False AMCG00000550
TU190029 other upstream 3368269 18153864 ~ 18159321 (+) True G150976

Expression Profile