RNA id: AMCG00000680


Basic Information

Item Value
RNA id AMCG00000680
length 354
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00000680
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 21907 ~ 26281 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGGGGCCGGGGCCTGCCTCGGGCAGCTTTGCCAGAGCAGGGCATCAGCCTGGGGGCGACTGCTGAAGGCTCCTGCTTCTGCTTTGGAGGGGTTAACCAGGTTCGAGAGCAGTGCAGGCATGCTGACGTTGGCAGGGAAGCTGAAGCGTGACGAGGGGATGAAGGCCGGCCGCAGCTCCAGCGGCTCCTCTGACTCGGCCCACCGCGTGTCCATCCGCGACCGGCTTCTGATCAAAGGTATGCTGTCGTCGCCGAAGTCGCTCTCTCCACGGGATGAACTGTGTGGTGCAGGGCAGGGTAGGACACTAGGGCGGAGCTCCTCTCCTCCGCCCTCAGCTCAGTCAGGGTAA

Function

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0019788 NEDD8 transferase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157268 lncRNA downstream 64762 91043 ~ 91285 (+) True G125484
TU157269 lncRNA downstream 66002 92283 ~ 92620 (+) True G125485
TU157299 lncRNA downstream 89830 116111 ~ 117302 (+) True G125510
TU157309 lncRNA downstream 102578 128859 ~ 129127 (+) True G125516
TU157379 lncRNA downstream 313359 339640 ~ 341771 (+) True G125561
AMCG00000681 mRNA downstream 12471 38752 ~ 40596 (+) True AMCG00000681
AMCG00000683 mRNA downstream 111824 138105 ~ 143895 (+) True AMCG00000683
AMCG00000694 mRNA downstream 341295 367576 ~ 414428 (+) True AMCG00000694
AMCG00000695 mRNA downstream 388163 414444 ~ 414795 (+) True AMCG00000695
AMCG00000702 mRNA downstream 1085600 1111881 ~ 1133185 (+) True AMCG00000702
TU157377 other downstream 313359 339640 ~ 341771 (+) False G125561
TU157655 other downstream 1573415 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 1642564 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 8590918 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 10121576 10147857 ~ 10154187 (+) False AMCG00000949

Expression Profile