RNA id: AMCG00000681


Basic Information

Item Value
RNA id AMCG00000681
length 194
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00000681
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 38752 ~ 40596 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGATATTACCAGACCGGaaaatttcaatttgaaatagaTGTCCCTGAAGCCTACAACATGGTGCCTCCAAAAGTGAAATGTTTGACCAGAATATGGCACCCCAACATCACAGAGACGGGCGAAATCTGCCTCAGCTTACTAAGGGAGCACTCGATCGATGGCACGGGCTGGGCCCCCACCAGGACGCTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10687 UBE2F; ubiquitin-conjugating enzyme E2 F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157268 lncRNA downstream 50447 91043 ~ 91285 (+) True G125484
TU157269 lncRNA downstream 51687 92283 ~ 92620 (+) True G125485
TU157299 lncRNA downstream 75515 116111 ~ 117302 (+) True G125510
TU157309 lncRNA downstream 88263 128859 ~ 129127 (+) True G125516
TU157379 lncRNA downstream 299044 339640 ~ 341771 (+) True G125561
AMCG00000680 mRNA upstream 12471 21907 ~ 26281 (+) True AMCG00000680
AMCG00000683 mRNA downstream 97509 138105 ~ 143895 (+) True AMCG00000683
AMCG00000694 mRNA downstream 326980 367576 ~ 414428 (+) True AMCG00000694
AMCG00000695 mRNA downstream 373848 414444 ~ 414795 (+) True AMCG00000695
AMCG00000702 mRNA downstream 1071285 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000705 mRNA downstream 1185721 1226317 ~ 1233934 (+) True AMCG00000705
TU157377 other downstream 299044 339640 ~ 341771 (+) False G125561
TU157655 other downstream 1559100 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 1628249 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 8576603 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 10107261 10147857 ~ 10154187 (+) False AMCG00000949

Expression Profile