RNA id: AMCG00000705


Basic Information

Item Value
RNA id AMCG00000705
length 693
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00000705
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1226317 ~ 1233934 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGGGGGTTTGCGAGTCGTCCAGATGTGGTCTTTCTCAGGCGCAGGAAGCCTTGGCGCTGGTGTGGTGCTCTGACCTCGGCAGCTTTTATCCTCCGCCAGAGCGTGGGGCTCTGTTGTGCCGCTCTGCCTCGCCGAGACGGCCTAGCACTGGCCTCAAGCTTCTTGACAACCTCTTCAAAGAGGTAGAGAATGTTGTCGCAGAAGATGAGGGGGGAATCATGTCCAAGATGGAGGTGAAGACGTCGCTTCTCGACAACATGATCGGCGTGGGAGACATGGTGCTGCTGGAGCCGCTGTCCGAGGACTCCTTCATCGAGAACCTCAAGAAACGGTTCGACCACAATGAGATCTACGCCCCAATTCTATACAAACaatcctcctccttcctcttcaTCGCTGACGCGCGGAGGCAGCGCCGCAGAGTGTCTCGGCGTGACCGCAGCGCCCGCAGACCTCGGCTCTGGAATGTAATCGCGCCGGGCCATCGTGACTCCCGCTCGGCGCCAGGCGGGGCCGCTGCAGTGGGGTGCTGTGAGGCTGCGCCGCGCCGGGCCGGCCCTGCTCCCCGCGCCCCTCGCCTCCCCTGCGGTCCAGACCAGTTGGTGCAGATGCCAGTCACCGGGGAGTCGGGCTTAGACCAGCACTGTTTATGTGACGGAGCCGCGCTGCGCGGGCGGCCATGGCTGTAA

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157440 lncRNA upstream 629182 596787 ~ 597135 (+) True G125613
TU157439 lncRNA upstream 650825 575290 ~ 575492 (+) True G125612
TU157432 lncRNA upstream 694405 529899 ~ 531912 (+) True G125605
TU157423 lncRNA upstream 739114 456502 ~ 487203 (+) True G125597
TU157384 lncRNA upstream 870588 354488 ~ 355729 (+) True G125565
TU157522 lncRNA downstream 70161 1304095 ~ 1307335 (+) True G125684
TU157523 lncRNA downstream 70161 1304095 ~ 1307335 (+) False G125684
TU157524 lncRNA downstream 70161 1304095 ~ 1307335 (+) False G125684
TU157567 lncRNA downstream 89569 1323503 ~ 1328639 (+) True G125713
TU157592 lncRNA downstream 192699 1426633 ~ 1426943 (+) True G125736
AMCG00000702 mRNA upstream 93132 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000695 mRNA upstream 811522 414444 ~ 414795 (+) True AMCG00000695
AMCG00000694 mRNA upstream 811889 367576 ~ 414428 (+) True AMCG00000694
AMCG00000683 mRNA upstream 1082422 138105 ~ 143895 (+) True AMCG00000683
AMCG00000681 mRNA upstream 1185721 38752 ~ 40596 (+) True AMCG00000681
AMCG00000708 mRNA downstream 14807 1248741 ~ 1249425 (+) True AMCG00000708
AMCG00000704 mRNA downstream 22847 1256781 ~ 1272965 (+) True AMCG00000704
AMCG00000715 mRNA downstream 161462 1395396 ~ 1395970 (+) True AMCG00000715
AMCG00000712 mRNA downstream 179861 1413795 ~ 1422116 (+) True AMCG00000712
AMCG00000713 mRNA downstream 199058 1432992 ~ 1447408 (+) True AMCG00000713
TU157377 other upstream 884546 339640 ~ 341771 (+) False G125561
TU157655 other downstream 365762 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 434911 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 7383265 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8913923 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10765730 11999664 ~ 12011425 (+) True AMCG00001002

Expression Profile