RNA id: AMCG00000708



Basic Information


Item Value
RNA id AMCG00000708
length 510
RNA type mRNA
GC content 0.65
exon number 2
gene id AMCG00000708
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1248741 ~ 1249425 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGGGCCAGCCAGCGCTGCAGAGGGAGACGTTTTTAGGCAGGGTGGACCCGGAGGGGTGCGTCCCCTCGCCCAGAGTGGTCCCCACACCAGCCCAGGCCTCGCCTGCTGCAGAGGAGGTGCCCAGAAGTGCCTGCCCCTCCCTGGACCTGGCAGGACTGCAGAGTCGCACCCAGGGGCTGCAGGCTCTCACATGGGCTGACCGGCAAACCGCCGGGTCCTGCTGCTGTGTGAAGCTGCGGTCACATGTCCCCACCTATGTCTGGTCTGCTTCAGACCGAGTGTTCCCGTGCGAGCTGCTAACCCCCCGTCCCGCTCTGCGTTTCAGCTACGCCCTGGCAGACGAGGCCTACCGCTCCCTGAGGGACCAGGACAAGGACCAGTGCATCCTGATCACCGGGGAGAGCGGCGCGGGGAAGACAGGTACCCAAACGCCAGCCCAGCAGGCTTCTctcactctcctcctcctgtcctgtcctgttcCGTTTTCAATGACAGTCCCTGAGGCTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU157440 lncRNA upstream 651606 596787 ~ 597135 (+) True G125613
TU157439 lncRNA upstream 673249 575290 ~ 575492 (+) True G125612
TU157432 lncRNA upstream 716829 529899 ~ 531912 (+) True G125605
TU157423 lncRNA upstream 761538 456502 ~ 487203 (+) True G125597
TU157384 lncRNA upstream 893012 354488 ~ 355729 (+) True G125565
TU157522 lncRNA downstream 54670 1304095 ~ 1307335 (+) True G125684
TU157523 lncRNA downstream 54670 1304095 ~ 1307335 (+) False G125684
TU157524 lncRNA downstream 54670 1304095 ~ 1307335 (+) False G125684
TU157567 lncRNA downstream 74078 1323503 ~ 1328639 (+) True G125713
TU157592 lncRNA downstream 177208 1426633 ~ 1426943 (+) True G125736
AMCG00000705 mRNA upstream 14807 1226317 ~ 1233934 (+) True AMCG00000705
AMCG00000702 mRNA upstream 115556 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000695 mRNA upstream 833946 414444 ~ 414795 (+) True AMCG00000695
AMCG00000694 mRNA upstream 834313 367576 ~ 414428 (+) True AMCG00000694
AMCG00000683 mRNA upstream 1104846 138105 ~ 143895 (+) True AMCG00000683
AMCG00000704 mRNA downstream 7356 1256781 ~ 1272965 (+) True AMCG00000704
AMCG00000715 mRNA downstream 145971 1395396 ~ 1395970 (+) True AMCG00000715
AMCG00000712 mRNA downstream 164370 1413795 ~ 1422116 (+) True AMCG00000712
AMCG00000713 mRNA downstream 183567 1432992 ~ 1447408 (+) True AMCG00000713
AMCG00000714 mRNA downstream 203187 1452612 ~ 1463637 (+) True AMCG00000714
TU157377 other upstream 906970 339640 ~ 341771 (+) False G125561
TU157655 other downstream 350271 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 419420 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 7367774 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8898432 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10750239 11999664 ~ 12011425 (+) True AMCG00001002

Expression Profile