RNA id: AMCG00000722


Basic Information

Item Value
RNA id AMCG00000722
length 2902
RNA type mRNA
GC content 0.62
exon number 7
gene id AMCG00000722
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1590362 ~ 1594603 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCGGGCTGCGTGGTGCGTGTGTGGGGAGAGCACTGTGACCGAGACATGGGCAGCGTGTGTTTAATGCTTATATATAAGGCTTTATCTTTACCCTGAGCGCTGGGACAGGAAAGCAGTGTGTATATTCTTCTGGGGGTCCCGGACCAGACACTGCCTGTACGCGTGGGGTTGTGGGGTCTTTTCCAGATTCTGGTCTGGGACCCCCAGAAGAGTTGTCCTAGTCTTCCCAACAAACAGAGAGGCAGCAGTAGCGTCCCTCCCCGCCGTCCCGTGAACCTGTCTCACCTCTGATCTGAAACTGGCCGCAGTCCACGGTCTctctattaaaccattaaagTGGATACAAGGGGGCGTGTCATACGGGACAGTCTAGTTACAATGTATTACAgagacccaaaacacacacagtggaaACGGCCCCCAGGACTAATTAAGACATGTAACATGCAAGGCGTGTTGTGTGGCACATGCCAGCGGTGTCGTTTTTCCTCGTTGTTGTCTGTTTGGCACTGTCTCTGCTGTCCTTTCTGTCCCCAGCCCCTGTGTGGGTCCTTGATGCGTAAACACTGTCTCCCtgagaaattgtttatttatttactgatttattaaaggcctttcttccccccccaccccacagcgACGTAGATTCGGGAGGATTGGAAAAAAAGACCTCCCACCGGCACCCTCTCCCTTCCCCTTCCTCACTCACTGATGGCGTGTGACGGCGACCTGTGTGCGTGAGGTCTGTCTGAGGAGAACAACAGCTGGtctgagagagagtgtgtgtgtgtgagagtcagCGAGGCAGGGCACAGCGCCCCACGGTACGGCGCAGGGCGGCACTAGGACCTGCACAGGCGCCGCCATGAAGATCGCGGTGGAGGGCTGCTGCCACGGCGAGCTGGACAAGATCTACGAGACGATCGGCTTCCTGGAGCGCCGGGAGGGCGTGTCCGtggagctgctgctgtgctGCGGCGACTTCCAGGCCGTGCGCAACGAGGGGGACCTGCAGTGCATGGCGGTGCCACTCAAATACCGGCACATGGAGACCTTCTACAGGTATTACTCCGGGGAGAAGAAGGCTCCCATCCTCACCATCTTCATCGGAGGAAACCACGAGGCCTCCAACCACCTCCAGGAGCTGCCCTATGGGGGCTGGGTCGCCCCCAACATCTACTACCTGGGTCACTTCGAGTTCCCGCCCTACGGCCCGGACACAGTGCGCAGCGTCTACCACGTCCGCAGCATCGAGGTCTTCAAACTCAAACAGATCCGGCAGCCCATGGACATCTTCCTGTCCCACGACTGGCCGCGGGGCATCTACCACTACGGCAGCACAGCGCAGCTGCTGCGCAAGAAGAAGTTCCTGCAGCAGGAGGTGCAGGACAACACGCTGGGCAGCCCGGCCGCCGCAGAGCTGCTCTCGCACCTGCAGCCCACGTACTGGTTCTCCGCCCACCTGCATGTCAAGTTCGCCGCCCTGATGCAGCACCAGTCGCAGAATGACGCTCCTCCCAGGACCACCAAGTTCCTCTCGCTGGACAAGTGCCTGCCTCACAGAGACTTCCTGCAGATCGTGGAGGTGGACGCCAGGCCCGGGGCATCAGACCGGCTGGAGTTTGACCCAGAGTGGCTGGCCATCCTGAAAGCCACGGATGGCCTGCTGAGCTGGGACCATCAGCCCTGGAGCGTCCCAGAGGACAACGGCCTGCACAGCCGGTGGGACTACAGCGCGTCTCTGGCCGCCATGGAGGCGGTGGTGGCGGAGCTGGGGGGCGACCTGCGCATCCCGGAGAACTTCAGCGTCACGGTGCCGGCCTACGAGCCGGGCCGCCCCCAGCCCCAGCGGCCGCCCAGCTACAGCCTGAACCCACAGACCACCGAGCTGTGCGCCACGCTGGGCCTCACCGACATCTACGCCAGGGTGGGGCGCCGAGCTGCGCGCCGGGGCgaggaaggggaggagggggaggaggaggaagaggagaacaTGAGCTCGGGCAGCGCGGAGGAGCCCAGCGAGTATCCCACTGACACCTCGGGCCTGTCCGGCTCCGTCAACCCCGACGAGATCACCATCGAGGAcgagtgggaggaggaggaggaggatggggtGGGAGCGGGCCCCAGCGCCGGACCCCCCGGCTCGCCGCTCTGCTCCCCGGGTCGGGGGTCCGCCGTCGCACGCCTCGTCCTGCCCTCCCCCGCCCGGCTCGACCTGCCCCCGCCCGTCTTCTCCGCCCCCTCGCCCTCCGACTCCCCTCCCGCCGCCCCCCCGGAATGTGGCCCCCCACAGCCCCGCATCCCCAAGCGCACCAGCGGAGAGGCGGGGGACCGGGGGgacggcggcggcggcggcacgGGGGCCACGCCCAAGATCAAACGCAGGAATCAGAGCATCTACACGGCGCTGGACGACGAGGGGAGCGAGTGATGGGGGAGAGCGATAGAAGCAGAGgagagcggagagagagaggaagaggagggcaCGAGCAGGACAGGGAGCTGGGAGCATGCGCCCCTGTGCTGGGAGGCTGGCGGTGGGATTGGCCCGGGTGTGCTGGTCTGAAGGCCTGTTAcaggagagtgtgtgtgtgagagagcgagTATAACCACAGAGCCCCACACGCAGGGATAAGAAGCTGGACTTTGCACTGCCGctccattgtgtgtgtgcgtgatgTCATGCTCCCCTCCCGGGCCTCGGGTTCTGAGCTGCTGTCTTTACGTTTCTTTCGTTCGTGCACAAATCTggatttaagttttaaaatgaaattgtttttAACAGGACGAGGGGTGGTTTTCTCCCCAGCAGCACAGGGGAGGGTCGGGGTGTTTAATttgtcttctgtatttttttaaagtcttgttttttaattaaaggagaAAGTGGGGAA

Function

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0008419 RNA lariat debranching enzyme activity molecular_function

KEGG:

id description
K18328 DBR1; lariat debranching enzyme

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157592 lncRNA upstream 163419 1426633 ~ 1426943 (+) True G125736
TU157567 lncRNA upstream 261723 1323503 ~ 1328639 (+) True G125713
TU157522 lncRNA upstream 283027 1304095 ~ 1307335 (+) True G125684
TU157646 lncRNA downstream 220 1594823 ~ 1609210 (+) True G125767
TU157621 lncRNA downstream 23205 1617808 ~ 1621888 (+) True G125756
TU157676 lncRNA downstream 217080 1811683 ~ 1814157 (+) True AMCG00000734
TU157877 lncRNA downstream 697232 2291835 ~ 2293872 (+) True G125955
TU157948 lncRNA downstream 833067 2427670 ~ 2520585 (+) True G125986
AMCG00000717 mRNA upstream 14923 1554678 ~ 1575439 (+) True AMCG00000717
AMCG00000714 mRNA upstream 126725 1452612 ~ 1463637 (+) True AMCG00000714
AMCG00000713 mRNA upstream 142954 1432992 ~ 1447408 (+) True AMCG00000713
AMCG00000712 mRNA upstream 168246 1413795 ~ 1422116 (+) True AMCG00000712
AMCG00000715 mRNA upstream 194392 1395396 ~ 1395970 (+) True AMCG00000715
AMCG00000723 mRNA downstream 5286 1599889 ~ 1606031 (+) True AMCG00000723
AMCG00000724 mRNA downstream 19234 1613837 ~ 1621391 (+) True AMCG00000724
AMCG00000725 mRNA downstream 43752 1638355 ~ 1644638 (+) True AMCG00000725
AMCG00000729 mRNA downstream 91377 1685980 ~ 1698573 (+) False AMCG00000729
AMCG00000730 mRNA downstream 110191 1704794 ~ 1710396 (+) True AMCG00000730
TU157377 other upstream 1248591 339640 ~ 341771 (+) False G125561
TU157655 other downstream 5093 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 74242 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 7022596 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8553254 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10405061 11999664 ~ 12011425 (+) True AMCG00001002

Expression Profile