RNA id: TU157662


Basic Information

Item Value
RNA id TU157662
length 1429
RNA type TUCP
GC content 0.66
exon number 6
gene id AMCG00000729
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1668845 ~ 1698573 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcTCTGTGTCAGTCCGTGCTCGGGTGCAGCTGCGGGGTGCACAGTGTCGCGCTGGGGTGCTGATCCCGGACACAGCGCGAACCGAACCGAGCCCAGTCCGGTCCAGAGCACCGAGCCAGCCGTTCATCTGTCCCTGTCGCTTTGCTTGTCATCGTCCGCCACCACCGCCACTCTCCCACCCCCCACGCCAGCCTCCACGGCACGTTTTGATGCTGTCTTCCCTTCTCTCCTGCTTGTTCCTGCGAAAGGTGCGAGAGCAGAACCGGGACAGGATCTCTCGTCGCCCCCCCTCCACGGGCCACTCAGAGCCAGAGACACCCTGCCCAGCCCAGGCAGAGGCGCACGGAGAGACGCACGGTCCTGCGGGGAACACGGAAGCCAGGCCAGCCGGACCTTTGGCAACTTTGTTGGTGGGTCAGTGAGTCAGTCCCCCCGGCGGCGGCGCACAGGACAGCGGAGGACTTCGGCGCTTTCCCCCGGTCTCCCCCAGAGAGCCGGAGCGGAGCCGAACCTCTTAAGCCCCGGCTCGGGCCCCTCTCCCCGCACCCCAGCACCCCCTTGTCCCGGAGCGGAGCAGAGAGACAGGCGGACGGGCACGCCGAAGTCCAGCCCTGGATTCAATACTTCTCATCAATGGGCAGAGCCTCCTCGCCAGCCGGCCGCGGTACAGACACTCCATAGCCAGCCCGTACCCTCTGGTGGGAGCCCCCCCTGCTGGCTGGCGGGGGATGGAGCGCCGCAGTGAGAGCCCCCGTCTGCGGGACAGTCCAGAGCGCAGGGGTAGCAGCCCCGACCTCACCGCCCCCCCGCCGGGGAAGATGAGCCGCCTGGAGCAGAACGGGAACCCCCCGGGACCGCGCATCCGCCTCAACGGAGCCCCCCTGAGGCCCCTCGGAGgccTGATGATCCCAGTGTTCTGCGTGGTGGAGCAGGCGGACGGCGGGGGGGAGGCGGACGGCCGCGAGGAGCACGGCGAGTTTGTGTTGGTGCGCAAGGACGTGCTGTTCACACACCTGGTGGAGACTGCTCTGCTGGCCCTGGGGTACTCGCACAGCTCCGCCGCCCAGGcccagggcaTCATCAAGGTGGGCCGCTGGAACCCCCTGCCCATCCACTTCCTGACCGACGCCCCCGAGGCCACAGTGGCCGACATGCTGCTGGACGTCTATCACATGGTCACTCTCCGCATCCAGCTGCAGAGCTGTGCCCGGCTGGAAGACCTGCCGTCCGAGCAGTGGAACCATGCCACTGTGCGCAACGCCTTGAAGGAACTGCTGAAGGAAATGAACCAGAGCACTTTGGCCAAGGAGTGCCCCCTCTCTCAGagtATGATCTCCTCCATCGTGAACAGCACCTACTACGCCAACGTCTCCTCCAGCAAGTGTCAGGAGTTCGGCCGCTGGTACAAGAAGTACAAGAAGATCAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157621 lncRNA upstream 46957 1617808 ~ 1621888 (+) True G125756
TU157646 lncRNA upstream 59635 1594823 ~ 1609210 (+) True G125767
TU157592 lncRNA upstream 241902 1426633 ~ 1426943 (+) True G125736
TU157567 lncRNA upstream 340206 1323503 ~ 1328639 (+) True G125713
TU157522 lncRNA upstream 361510 1304095 ~ 1307335 (+) True G125684
TU157676 lncRNA downstream 115436 1811683 ~ 1814157 (+) True AMCG00000734
TU157877 lncRNA downstream 595588 2291835 ~ 2293872 (+) True G125955
TU157948 lncRNA downstream 731423 2427670 ~ 2520585 (+) True G125986
TU158014 lncRNA downstream 861745 2557992 ~ 2558257 (+) True G126036
TU158024 lncRNA downstream 1070008 2766255 ~ 2766539 (+) True G126044
AMCG00000725 mRNA upstream 24207 1638355 ~ 1644638 (+) True AMCG00000725
AMCG00000724 mRNA upstream 47454 1613837 ~ 1621391 (+) True AMCG00000724
AMCG00000723 mRNA upstream 62814 1599889 ~ 1606031 (+) True AMCG00000723
AMCG00000722 mRNA upstream 74242 1590362 ~ 1594603 (+) True AMCG00000722
AMCG00000717 mRNA upstream 93406 1554678 ~ 1575439 (+) True AMCG00000717
AMCG00000730 mRNA downstream 8547 1704794 ~ 1710396 (+) True AMCG00000730
AMCG00000738 mRNA downstream 96161 1792408 ~ 1798431 (+) True AMCG00000738
AMCG00000734 mRNA downstream 109160 1805407 ~ 1812234 (+) False AMCG00000734
AMCG00000737 mRNA downstream 128622 1824869 ~ 1830750 (+) True AMCG00000737
AMCG00000736 mRNA downstream 173332 1869579 ~ 1873692 (+) True AMCG00000736
TU157655 other upstream 68206 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 1327074 339640 ~ 341771 (+) False G125561
TU159397 other downstream 6920952 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 8451610 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 10303417 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 13473664 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 13712865 15409112 ~ 15420880 (+) False G128823

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074484 False 2592 mRNA 0.54 12 NC_007120.7 32560399 ~ 32604414 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_02167959_02200058.mRNA True 3659 mRNA 0.52 16 CI01000009 2167363 ~ 2200058 (-)