RNA id: AMCG00000939


Basic Information

Item Value
RNA id AMCG00000939
length 3548
RNA type mRNA
GC content 0.42
exon number 18
gene id AMCG00000939
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9833360 ~ 9867598 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATAGTGTCAATCACAGCTCTCTTACTTCCTGGTTCAGCTTCCAGATATGTCTTGCTAAATTGATGAAGGGAGGCTACAGTTGCATCTGTTTTCAGACACTACATAAAGCACACCAGGAAAAGCAGCACCGCTGAAAGAAACAACTCCTATTTTGACACTCCAAACCTTCCTTGTCAAAGgggACACTATGGCATTCCGAAAGGCAGCGAAGGGTACAGTACTTATTGGAGGGGGTGCCCTTGCTGCAATTTATGGCATCTCCCAGCTCTCTGAATATAAGAAAAGAAAGACCCGACTTTCGTATGTAGAAGCAGCAGAACCAATCAGAATACACTATAACGATGAGCTACCTCCAAGAGTAACTCAACTGATGACCCTTCAGACAACACAGGAATTTGATGTGTTGATTGTTGGGGGAGGAGCTACTGGCTCTGGGTGTGCCTTAGATGCAGTTACTCGAAATCTTAAAACTGCCCTGGTGGAGCGAAATGATTTCTCATCAGGCACGAGCAGCAGGAGTACCAAACTTATTCACGGAGGAGTAAGATATCTACAGAAAGCCATTATGAAATTAGATTATGAACAGTATATGATGGTTAAAGAAGCACTTCATGAACGCTCTAACCTTCTGGAAATTGCACCGCATTTGTCTGCGCCTTTACCTATTATGCTTCCTGTTTACAAGTGGTGGCAGATGCCATACTTTTGGGCTGGCATCAAGATGTACGACCTGGTGGCGGGCACGCAGTGTTTGAAGAGCAGCTATGTCCTCAGCAAGACAAAGGCTCTTGAACTTTTCCCCATGCTGAAGAAAGACAAACTCGTGGGTGCCATTGTCTATTTTGATGGACAACACAATGATGCACGAATGAACCTCGCCATCGCCCTTACTGCTGCCAGGTATGGCGCTGCCATAGCCAATTACACTGAAGTAGTGCGCCTACTAAAGAAGACAGATCCTGCAAGTGGAAAGGAGCGAGTCTGTGGAGCACGATGCAGAGATGTTATAACAGGGCAGGAATTTGATGTCAGAGCCAAATGTGTTATCAATGCCACGGGACCTTTCACAGACACGCTACGGAAAATGGATGATCAGAAAAACTCTAACATCTGTCAGCCCAGCGCTGGTGTACATATCGTCATTCCTGGCTATTACAGCCCTGACAACATGGGGCTCCTGGACCCCGCCACCAGTGATGGACGGGTTATCTTTTTCCTGCCGTGGGAGAAAATGACTATTGCTGGGACCACCGACACTCCCACGGATGTCACTGCACACCCAATACCGACCGAAGAGGACATCAATTTCATCCTGACTGAAGTCCGCAACTACTTGAGTCCGGATGTGGAAGTGAGAAGAGGAGATGTCTTGGCAGCCTGGAGTGGTATACGTCCCCTGGTCACTGACCCAAACTCCAAGGACACGCAGTCCATTTGCCGCAATCACATTGTTAATATAAGCGAGAGTGGACTTGTTACTATAGCAGGTGGAAAATGGACAACCTATCGTTCAATGGCCGAAGAGACATTAGATGCAGCAGTCGCGTCTCACAACCTGAATGCTGGGCCTAGCAAAACTGTAGGCCTGATGTTGGAAGGAGCCAAGGACTGGACCCCTACCATGTATATCCGTCTGGTTCAGGATTATGGTCTCGAGATGGAGGTTGCTCAGCATCTTGCTGCTACGTACGGAGGACGGGCTTTTGACGTGGCCAAAATGGCAAAGGTTACTGGAAAGCGGTGGCCCATCCTCGGGAAACGTCTGGTATCAGAATTCCCTTATATTGAAAGCGagGTTCAATATGCAATCAAAGAGTACGCCTGCACTGCCATCGATGTCATCGCACGCCGCACACGACTGGGGTTCCTGAACGTGCAAGCTGCTGATGAAGCACTTCCAAGAATTGTAGAAATAATGGGCAAGCACTTAAAGTGGAGCGAGCAGAAGAAAAAGGAAGAACTTGAAACGGCAAAACAGTTCCTGTACTACGAAATGGGCTACAAGTCGCGGTCAGAGCAGCTAACAGACACCTCTGAAATAAGTCTTCAACCATCAGAAGTTGACAGGTACAAAAAGAGATTTCACAAGTTTGATAAAGAAAAGAAGGGATTTATTACCACAGTTGATGTTCAGAGGGTCTTGGAGAGTATTAGTGTCCAGATTGACGAAAACGCACTCCATGAAATCCTTAATGAGGTGGACCTGAACAAGAACGGACAGGTTGAACTTAATGAATTCTTGCAGctTATGAGTGCGATCCAGAAAGGTCATGTGTCTAGTAGCAGGCTTGCCATTCTGATGAAAACCGCAGAGGAGAACCTGGATCAGAGGGAGCCCGTGTCCGTCGACCGCAGCGGTGGAGGAGTGTAAACCTCCGAGTGCCAAATGTTGCCCCGAGAAACACTGAATGCaaatctgctgctgctggtggctTGACTTGAAAGTTACTGAGAGGCTTCTCAAGTCTATAACTGCAATGAATGATCATTAGTATTcttcttaatattatttattcatcgTTATCTTTGCCTtcatatagtttgttttatgtgGCATTTCTCTTCTTTTGTAAGTGTTTACACAGTGCATTTTTTATTgagaacatttcattttgtttgaaacTATTGGCAGTTTGTTCAGTGATCTCCTGCTTCtcagtattgttgtttttgtctgtaatAATTATACTGATACTTTTCAGACATCTGGCTACTGTTAAATTTTTGCACAAATTCTtgaatgtgttgtgttgttacTGCTGTGTTATCCAGCATTGTGTTGTACTTCAGATTATCATGAAATGGCGTTTGCAGTACAAATCAATGTTAAAATTGTTTGTATTCAGTATTTAGCTGTCTAATTAAATGTTTGGTGTTGTAAACCTTACTACTGTGCCATTTTATACCTATTATTATATTCGCGATGTGATAggaaacatttttatatcagattttttttaatatgatccatttttaaaggtattttcaGTAAGTTCTGTAGTTTACAAGGAACATTAAATTGCTTAAATtgttccatttttaattaactgccattttaatctttatattttatttttaaaaagtgacttTTAAACGCAAGacatgtatttgatttaatgcaCTTTGATGTAAAGTGAGCTACAAATCAACAATAAGCATGCTTAAATATTCTGAATGCTTATGGGTGTATGTGATTGGTTCTtggaagtatttttttgtaatatgattttattatgcTGAATGGGATTAAGTATTGTATTTGAGCCTGGGTTTTAATTTCTCTATCTGTCTATGCACTTGgtgtttttattactattaatttattacttgTGGTATGCTGGGTGAGCCGCTTGCATTTATAGAGTAATAAgggaatgtatttaatgtgcCTTGCTTTCAAACCCAGTATGAATTGAGAGCATGAATCAATAGAACTGATTAAACTATACACTCACTGGCTTTTAGCATGCTTAATTTCACAGTctctataaataatacaattattgtttcatgcagacttttaaaataaagatttcatACATCTGCT

Function

GO:

id name namespace
GO:0006072 glycerol-3-phosphate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity molecular_function

KEGG:

id description
K00111 glpA, glpD; glycerol-3-phosphate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159589 lncRNA upstream 455771 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 750479 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 1193537 8638596 ~ 8639823 (+) True G127144
TU159357 lncRNA upstream 1538487 8294518 ~ 8294873 (+) True G127096
TU159352 lncRNA upstream 1543554 8288789 ~ 8289806 (+) True G127091
TU159869 lncRNA downstream 575395 10442993 ~ 10444937 (+) True G127509
TU160196 lncRNA downstream 1804170 11671768 ~ 11742750 (+) True G127774
TU160371 lncRNA downstream 2226543 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 2493317 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 2493317 12360915 ~ 12362152 (+) False AMCG00001022
AMCG00000936 mRNA upstream 216460 9616316 ~ 9616900 (+) True AMCG00000936
AMCG00000934 mRNA upstream 255659 9576061 ~ 9577701 (+) True AMCG00000934
AMCG00000935 mRNA upstream 279709 9518281 ~ 9553651 (+) True AMCG00000935
AMCG00000929 mRNA upstream 377259 9454157 ~ 9456101 (+) True AMCG00000929
AMCG00000930 mRNA upstream 402304 9395618 ~ 9431056 (+) True AMCG00000930
AMCG00000938 mRNA downstream 70609 9938207 ~ 9945452 (+) True AMCG00000938
AMCG00000948 mRNA downstream 156690 10024288 ~ 10035708 (+) True AMCG00000948
AMCG00000946 mRNA downstream 169076 10036674 ~ 10041048 (+) True AMCG00000946
AMCG00000949 mRNA downstream 232685 10100283 ~ 10153223 (+) True AMCG00000949
AMCG00000947 mRNA downstream 334059 10201657 ~ 10278211 (+) True AMCG00000947
TU159397 other upstream 1213165 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 8137113 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 8232721 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 9491589 339640 ~ 341771 (+) False G125561
TU159756 other downstream 280259 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 2132066 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 5302313 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 5541514 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 8155462 18023060 ~ 18044251 (+) True G129365

Expression Profile