RNA id: AMCG00000994


Basic Information

Item Value
RNA id AMCG00000994
length 3524
RNA type mRNA
GC content 0.44
exon number 18
gene id AMCG00000994
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11840490 ~ 11847160 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGCTCCGCACAGCACAGCGCCCGACGAGGCGTTTGCCTGCAGCTCGGGTATTCTGATCCTCGGCGGGCTCCGTAGAGTCGAGCGCAGGGGCTTGTGGGACGGGAGGACATAAAGCAGCGCTACAGCAGCCGCGCCGCGCCGTGAGGGACCCTGTGGAGCCGGACGCGTTTGCGCAGTTTGGGAACCGGCGAGAGCAAAACGTGGACGCCTCATGTTCCGCGGAAGTGCCGCCGGTCCGACCGAGTCAAGGCGCATGCGTGCCCGTGTTTGGGGTTTCGCTTCAGTGTGGTGTAGTTTGCATTATCAGACATTTAAAGATGGCAGAAAACAATCAGGAGATGACGCCCATGGAGAAAAAAGTGGCTGAACAGATTGAGTATTACTTCAGTGATCACAATCTCCCAAGAGACAAATTCCTCAAAGAACAAATACAGCTCGATGATGGATGGGTGTCTCTTGAAACCATGATTAAATTCAACAGGTTGAGCCGACTGACCACGGATTTCAAAGTCATCGTGGAGGCGTTGAAAAAATCCCAGTCTGGACTTCTGGAGATACATGAAGATGGAACCAAAATCAGGAGGTCCCTCGACAAGCCCCTGCCAGAAGTAAACGACGAGTACAAAGATGGAGTGAAACACAGATCGGTCTACATGaaaggcTTTCCCCTGGATGCCACCCTAGATGACTTGAAGGAATGGTTGGATGGCAAGGGAAAAATTGAAAGTATTCAAATGAGAAGGAACTTGCAAAGGCAATTCAAGGGATCGGTATTCATCGTTTTTGATACGGATGCATCCGCAAAGCAGTTCGTCCAGCTGCCGGATTTGAAATATAAGGACAATGAAACGGTTGTCCTTTTAAAGGAAGATTACTATGTGAAGAAAAATGAGGAGCGGAAACAATACAGAGCTGAAGCCAAGGCTAAAGCAAAGCAagagaaagaagaaaagcagaaacaagCCGAAGATGAAGAGATGAAATCTCTGGATGAACAGACCGGCTGCTTGCTGAAGTTTTCAGGAGAACTTGAGCAGACCTCCAGGGAAGACTTCCACGAGATATTTGCTAGCCATGGACAAATCAAATGGATTGATTTCATTAGAGGTGCTAAGGAGGGCACCATCCTATTCAAGGCCAGTGCGAAGGAAGCCCTTGACAAGGCCACCGAGGCTAATGGAGGGAACTTGCAGATCAAGAAAAAGGACATCAAGTGGGAGGTGCTGGAGGGCGACGTGGAGAAAGAGATGCTGAAAAAGATAATCGAAGATCAGCAGGAAACGATGAACAAACGGAGAGGACGAGGTGGTCGGAAATTTGGAGGACGAGGGAGGGGTGGACGCAGAGACCGTGACCGAGGAGGAAGAGATCAGGGAAAAACGCATTACCAAGGGAAGAAGACTAAATTTGATAGTGAAGAAGAGGAGGATGCAGCTCCTGCAAGCCCAAAGAAGAGAGCTCTGGAGGCTAAATCTGAAGATGTTGATGAACCAGCTgccaaacaaatcaaaactgaaatcaaacccgaaatcaaaactgaaaacgGTTCTGAGAAACAGTGATGCAGTCATCTTTATTTGTATGGGAATCTTTTAAATCCATTCCGGTGGAGGCCTCACGTCGTGGAGAAGCGTATGAAATCCACCTCAATGTCAACCTGCAGTGAGAATGTAATGATTGgataaaattgtaaaatatacaacCTTTTTTGTTTGCCCCCCCCACCCTATCTCTCAAATCTTATGGGCACTAGAGTTGGCAGATGTGTGCATGTTGTGATGCAGGATTACAACAATTTGAAGAGGCCTGctagattttattttgtcactTTGGAAACTGATCGGTATATAGTTTTAAAGCGTTGCCTGCTGCAGCATTTGATGCCTTTGCTCACTCCAGGAATTAATTCATGGACAGAGGTTATAAAGCTTATGTTAGTATGTAAGCCTTCTCTCCTTTCAGTCCTTGAGACTACAGCTATCTTGGTAAAAGCGCTGTTacccatttttttgtttttgtttaatgtataaacTAGATTTTTGTATCCaaaccatttcattttgattttggtCATAGGAGTGTATGATCCTGGTTATAAGAAACCTGAATGGCTTCTTCCTCTGTTGCTATCCACCCCTTTTGCCAGTCATGTACActtcctttattaaaaaaaaaaaagtaaaaccttAAGTTGccttcctttttaaaatcatgtttgcAAAGTGCACTGTATCATTAAATTACTGTATAAACCAGCTTAAAGTGAATGGTTACTGGTCTTGCCTACAGTCTGAAACTTACCGATTTCTTTTTATGGAACTTGTATGTTGCTGGCAAGTCGTATCTAAGCTCTGCTAATACTTCCATTTTGACTTTCCAATCACTCGCTTTCTTTTGgatgtgctaaaaacaaatatacatccATTACAATAGAGTGGCTCCGTTCTGTGGACTTCTCACCTACACATTCATTGTAATACTTACTTCTCGTGTTGATGTCTTATGAAGGGAATACACCGCATTGCTTGCCATGTTTAATGCTGTTTTGAGAAAGTGCATGTCCATACCTGGTAATTACAGATGAGAGATTGGGAGCTCCAGATGCCATGAAATGAAGGAAAAAGCCTCTGagaaataacatttgtatttcttcattaaaattCTGAATTGCAATTTATGACCAGAcaactaaaatgtttatatactaTATTCACCCCTCTAAATTAAAGTGCTAATATGCTTCACCAGTGGTAgctgaaatattgtatttacacATTCTCTATGTACAACCCACAGATTAAGGTGGGGTTAATGATGCAAGCACTAACTATTGATTTACTGACCTTTATTGTGTTTGGTTCCAAATGGTGGATTCATGATGACTGTATCAAACTTATTGTAGAATCTGTCGGACTCCAACGAGCAGACGTCACACTGAACCATGTCTATGTTTGTGAGCTCGAACTCTTCTGCATTCCTGCTAAATATCTCCAACGCATCTTCATCAATGTCAAAGCCCACGCACAGCCTTGCATCTAGCATGGCAGCGCCGACGCTGAGAACGCCACAGCCACATCCCAGATCTGCCACCAACCTGCTTTCAATGTCATCGAAGGAGTTGTGGATGTGTGAAAGCCTCACCGGCGATGTGGGGGCTGGTGGGGTACTGCTCGAGAAGCAGCTTTGGGTCTTCAAACACATCGACCTGCTGTAGGCAGCTTTCCAGCTCCTTCAGTTTCATGTCTGCAATTCTTTTATATGGATTAGATTGCAATTAGGACCctgCCATGTGACGTCCTCCTTCGTCTGTTCACCTTCCTTAATCAGGACAAATGTCAcgtaaaagcaaaaaatattgtatatttctctccctctttcaaaTACCCGTAGTCACGTTgttattttgtgctgttttatcGATTGTGCAGTGAAACACATGTAAAGTGCTGTATAGTTTCCATGCTGCAACCCAAGGCGGAAGCACGGAGGGTAAACACGGAGCCACAGCAAAAGCGGTCCGGG

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K11090 LA, SSB; lupus La protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160196 lncRNA upstream 97740 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 1395553 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2462901 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2757609 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3200667 8638596 ~ 8639823 (+) True G127144
TU160371 lncRNA downstream 246981 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 513755 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 513755 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 692921 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 758879 12606039 ~ 12655172 (+) True G128101
AMCG00000995 mRNA upstream 597 11826376 ~ 11839893 (+) True AMCG00000995
AMCG00001001 mRNA upstream 24165 11815603 ~ 11816325 (+) True AMCG00001001
AMCG00000993 mRNA upstream 29201 11802855 ~ 11811289 (+) True AMCG00000993
AMCG00000997 mRNA upstream 45040 11786542 ~ 11795450 (+) True AMCG00000997
AMCG00000996 mRNA upstream 55748 11746159 ~ 11784742 (+) True AMCG00000996
AMCG00001004 mRNA downstream 1217 11848377 ~ 11872129 (+) True AMCG00001004
AMCG00001006 mRNA downstream 35484 11882644 ~ 11909312 (+) True AMCG00001006
AMCG00001005 mRNA downstream 78165 11925325 ~ 11933099 (+) True AMCG00001005
AMCG00001007 mRNA downstream 104215 11951375 ~ 11962697 (+) True AMCG00001007
AMCG00001002 mRNA downstream 153848 12001008 ~ 12002172 (+) False AMCG00001002
TU159756 other upstream 1686303 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3220295 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10144243 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10239851 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 11498719 339640 ~ 341771 (+) False G125561
TU160309 other downstream 152504 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3322751 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3561952 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6175900 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6698733 18545893 ~ 18547915 (+) True G129453

Expression Profile