RNA id: AMCG00001002



Basic Information


Item Value
RNA id AMCG00001002
length 300
RNA type mRNA
GC content 0.50
exon number 3
gene id AMCG00001002
representative False

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11999664 ~ 12011425 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTTGTCCAGGTCCAGATAGGCAGGCTGAACAGAAGCAACAGAGAACCCCTCGGCGAAGGTGCCAGCAGCCCAAACTGCTCAACAGCCCCGAGGACAGCCTCTACTATAACCAGTTAAATAGAACTCTGGATTATCAAGGGAGCAAGAGGAAGCCGAGAAAACTTGGtcaAATCAAAGTGCTGGATGGAGAGGATGAGTACTACAAATTATTGTCAGCTGTGGAGTCAATCCCTGAGGAAGACAGTTCATCCAATCCTCCTCCCACTCTGTCAAGAGGGCCAGTGTTCGCTCAGAGCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160196 lncRNA upstream 258258 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 1556071 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2623419 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2918127 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3361185 8638596 ~ 8639823 (+) True G127144
TU160371 lncRNA downstream 91969 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 358743 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 358743 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 537909 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 603867 12606039 ~ 12655172 (+) True G128101
AMCG00001007 mRNA upstream 38311 11951375 ~ 11962697 (+) True AMCG00001007
AMCG00001005 mRNA upstream 67909 11925325 ~ 11933099 (+) True AMCG00001005
AMCG00001006 mRNA upstream 91696 11882644 ~ 11909312 (+) True AMCG00001006
AMCG00001004 mRNA upstream 128879 11848377 ~ 11872129 (+) True AMCG00001004
AMCG00000994 mRNA upstream 153848 11840490 ~ 11847160 (+) True AMCG00000994
AMCG00001009 mRNA downstream 12542 12014714 ~ 12017222 (+) True AMCG00001009
AMCG00001008 mRNA downstream 17633 12019805 ~ 12034616 (+) True AMCG00001008
AMCG00001003 mRNA downstream 38153 12040325 ~ 12062111 (+) True AMCG00001003
AMCG00001013 mRNA downstream 70331 12072503 ~ 12078897 (+) True AMCG00001013
AMCG00001010 mRNA downstream 77826 12079998 ~ 12092059 (+) True AMCG00001010
TU159756 other upstream 1846821 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3380813 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10304761 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10400369 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 11659237 339640 ~ 341771 (+) False G125561
TU161370 other downstream 3167739 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3406940 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6020888 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6543721 18545893 ~ 18547915 (+) True G129453
TU162312 other downstream 6552979 18555151 ~ 18558174 (+) False G129442

Expression Profile