RNA id: AMCG00001005



Basic Information


Item Value
RNA id AMCG00001005
length 774
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00001005
representative True

Chromosome Information


Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11925325 ~ 11933099 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATTGGCTTGGAAGCTCTGGCAGATCCCTCCGAAGACTGGGACATCATAGAGACCATCGGGAAAGGAACTTATGGGAAAGTCTACAAAGTCACCAGCAGAAAGGATGGGAGCGTGGCTGCTGTGAAGGTTTTGGATCCCATAAATGTAAGTGAACAGGAGTGCGAGAAGCTGCGCACAGCACCAGCACATACTGTTCACCTCTGGGATGTTGACGAGGAGATCGAGGCCGAATATAACATCCTGCGCTCCCTGTCCAATCATCCCAACGTTGTCAAGTTTTATGGGATGTTCTACAAGGCGGATGATGTCTCAGGGGGGCAGCTATGGCTGGTCCTTGAGctGTGTAATGGGGGCTCTGTCACAGACCTCATCAAAGGACTGCTCATGCGTGACCAACGCTTGGATGAAGCTGTAATCTCATACATCTTATATGGTGCTCTCTTGggTCTTCAGCATTTGCACAATAACCGCATCATTCATCGTGACGTCAAGGGAAACAACATTCTTCTGACAACAGAAGGAGGAGTCAAGCTCGTTGACTTTGGTGTGTCAGCTCAGCTCACCAGTGCTCGTTTGAGAAGAAATACTTCAGTTGGAACTCCATTTTGGATGGCTCCCGAGGTCATCGCTTGTGAACAACAGTATGACTATTCATATGACGCTCGTTGTGACGTGTGGTCACTCGGCATCACTGCCATTGAACTGGGTGATGGAGATCCCCCTTTGTCAGAAATGCACCCTGTCAAAGCCCTGTTCAAGATCCCCCGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU160196 lncRNA upstream 182575 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 1480388 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2547736 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2842444 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3285502 8638596 ~ 8639823 (+) True G127144
TU160371 lncRNA downstream 161042 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 427816 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 427816 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 606982 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 672940 12606039 ~ 12655172 (+) True G128101
AMCG00001006 mRNA upstream 16013 11882644 ~ 11909312 (+) True AMCG00001006
AMCG00001004 mRNA upstream 53196 11848377 ~ 11872129 (+) True AMCG00001004
AMCG00000994 mRNA upstream 78165 11840490 ~ 11847160 (+) True AMCG00000994
AMCG00000995 mRNA upstream 85432 11826376 ~ 11839893 (+) True AMCG00000995
AMCG00001001 mRNA upstream 109000 11815603 ~ 11816325 (+) True AMCG00001001
AMCG00001007 mRNA downstream 18276 11951375 ~ 11962697 (+) True AMCG00001007
AMCG00001002 mRNA downstream 67909 12001008 ~ 12002172 (+) False AMCG00001002
AMCG00001009 mRNA downstream 81615 12014714 ~ 12017222 (+) True AMCG00001009
AMCG00001008 mRNA downstream 86706 12019805 ~ 12034616 (+) True AMCG00001008
AMCG00001003 mRNA downstream 107226 12040325 ~ 12062111 (+) True AMCG00001003
TU159756 other upstream 1771138 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3305130 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10229078 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10324686 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 11583554 339640 ~ 341771 (+) False G125561
TU160309 other downstream 66565 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3236812 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3476013 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6089961 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6612794 18545893 ~ 18547915 (+) True G129453

Expression Profile