RNA id: AMCG00001006


Basic Information

Item Value
RNA id AMCG00001006
length 2021
RNA type mRNA
GC content 0.51
exon number 15
gene id AMCG00001006
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11882644 ~ 11909312 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATCCCCAGATGCAGATGTTGCTATGGACCTGGGCTCATCGGAGCAGCAGGTGTCTGAGGTGCTGTATGACTGTGTCATTTGTGGACAGAGTGGCCCCTCCACAGATGACAGGCCCACTGGCTTAGTGGTTCTGCTTCAAGCATCTTCAGGGCATCGTTGCAAAAGCACTGAGCTGAAGAAGCTACCAACCAGCGACGAGGAGCGCATTTACCCCGAAGATACATGTGGAGCAGCCAATGATGTCAGACTGGCAATGTTACAGCGCTTCTTCAAGGACAGTTCATGTCTGCAGTCAGTGTCTATTGGATGGGAAGGAGGCGTGTACGTGCAAACATGTGGCCATACTCTCCACATAGACTGCCACAAGTCTTACATGGAGTCATTGCGAAACGACCAGGTGCTGCAGGGCTTCTCGGTGGACAAGGGGGAGTTCACCTGCCCTCTCTGCAGACAGTTTGCCAACAGCGTCCTGCCCTGCCGCCCAGGCCGAGGTGTAGAGTTGGGCCCCTGGCATGCTCACAGCAACAAGAACATTGTCACCCTTGTGAAAGAAGTCGAAGAGTTACAGGAACACCTGGGGACATTCCCAtcagAATCCAATCTGAGTAAAGAGATGGAGTCTTTGATAAAGGACATAAAGAACACAACCCAGAAGAAATACATGGACTACAGCAAGACCCCAGGATCTCCAGataatgacttcctgttcatgtATTCTGTAGCTAGGACTaacctggagctggagctggtgcaTCGTGGGGGAGATTTGTGCTGCGGTGGAGCCAGTGCTGCTGCCAAGCGCTCCTGCCTCAATCAACTGTTTCATGTGATGGCAATGCACATGCGCCTTTACAGCATTGACTCGGCCTACAACCCCTGGACCAAGCTGACGCAGCTGACGCATAAGGATTTAAAAATCTGTGATGATGACAGGCCAGAGGTCCCCATGCTTTTCAGAGATGTCCCTTCTTTACTGATCATTTTTGTGTTAACGATGCCACAGCCTCTGCGAAAAGaACACTTTACCTGCATTGTGAAGATCTTGTACACGTTACAGTACGTTCACGCCATCACAGTGCTTTCGGTCAAGTTCACTCCCGAGGAGAGATTAGCTTGGAAGACCTCAGGAGCTCTTAAGAAGaatacCTGCAATGCAGAAAAGTGTAGCGAGACATTGTTGAGCCATGTCATAAGCGAGTTGTGTAAAGGAAAGAGCTTTTATGAAGTGGCCAATGATGAACTATCAATGCTAACTTCCAGTATCTGGTCCCCTCAGTCGATCGAATATGCCCTTCAGCAGTTTTGCCTCCCTTTCCTCCGCATCACCAGCCTTCTGCAACACCACCTGTATGGAGACGACTTACCGAGTTGTCTGAGAGAAGAGGAATTTTCTGTGCTGGCAAGCTGTCTAGGGCTTCTTCCATCTACTTTCCAGCCATCAATCCAGTCCAGCAGTGCCTCCTGTCTTGAGTGGTCAGTCTCCGCTTTTGACTTGATATCTCAGTGGTGCTCAGAAGTGACGGCATTTGCAGACgcacagaaaaaacatgctGTGACTTTGCTTGTTCAAGATCCTCATTGGTCTGCACCACATCTTCTGCACTTACCAGAGAATTACAACACCATCTTCCAGTACTATCACAGGAAGGCCTGTACGGTCTGTAATAAGGTGCCTAAGGATCCTGCACTGTGTCTCGTTTGTGGCACGTTTGTGTGCCTGAAGGGACTTTGCTGCAAGCAACAGAGTTACTGTGAATGTGTCCTGCATTCGCAGCACTGTGGGGCAGCAACAGGAATATTCCTGCTGATCAACGCCtccgtcatcatcatcatcagaggCCATCGATTCTGCCTGTGGGGCTCGGTCTACCTGGACGCCCatggagaggaggacagagacCTCCGCCGTGGCAAGCCGCTCTACCTGTGTGAAGAAAGGTACCGGGTGTTGGAGCAGCAGTGGGTGTCTCACACCTTCGACCACATCAACAAGCGCTGGGGCCCCCATTACAATGGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160196 lncRNA upstream 139894 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 1437707 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2505055 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2799763 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3242821 8638596 ~ 8639823 (+) True G127144
TU160371 lncRNA downstream 184829 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 451603 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 451603 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 630769 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 696727 12606039 ~ 12655172 (+) True G128101
AMCG00001004 mRNA upstream 10515 11848377 ~ 11872129 (+) True AMCG00001004
AMCG00000994 mRNA upstream 35484 11840490 ~ 11847160 (+) True AMCG00000994
AMCG00000995 mRNA upstream 42751 11826376 ~ 11839893 (+) True AMCG00000995
AMCG00001001 mRNA upstream 66319 11815603 ~ 11816325 (+) True AMCG00001001
AMCG00000993 mRNA upstream 71355 11802855 ~ 11811289 (+) True AMCG00000993
AMCG00001005 mRNA downstream 16013 11925325 ~ 11933099 (+) True AMCG00001005
AMCG00001007 mRNA downstream 42063 11951375 ~ 11962697 (+) True AMCG00001007
AMCG00001002 mRNA downstream 91696 12001008 ~ 12002172 (+) False AMCG00001002
AMCG00001009 mRNA downstream 105402 12014714 ~ 12017222 (+) True AMCG00001009
AMCG00001008 mRNA downstream 110493 12019805 ~ 12034616 (+) True AMCG00001008
TU159756 other upstream 1728457 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3262449 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10186397 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10282005 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 11540873 339640 ~ 341771 (+) False G125561
TU160309 other downstream 90352 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3260599 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3499800 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6113748 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6636581 18545893 ~ 18547915 (+) True G129453

Expression Profile