RNA id: AMCG00001007


Basic Information

Item Value
RNA id AMCG00001007
length 1675
RNA type mRNA
GC content 0.48
exon number 13
gene id AMCG00001007
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11951375 ~ 11962697 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCCTGATCAAGGACTTTGAGAAGCGGCCCTCTGTCACTCACCTGCTGGAGCACCCGTTCATCAAGCAGGCCCACGGGAAAGACATGGCCCTGAGGCAGCAGCTCGCCACGCTCATCCGAGAGCAGCAGGGGTCGGGCTGCCGGGCCAGGACCAAACATGAAAGGATCAATACCAGAAAAACTCTAAAAGTGGAAAGCTGCCCTGACGACGACTTGGTAAATCTTGAAGTATTAGATGAGGAGACAATTATAGCTAATTTGCAGAGGAGATATGCAGACCTGCAGATCTACACGTATGTTGGAGATATTCTGATTGCTTTAAACCCCTTTCAGAATCTCAGCATCTACTCACCACAGTTTTCTAAGCTGTACCATGGAGTCAAGCGTTCTTCAAACCCTCCACATATATTTGCAACGGCAGATGCGGCCTACCAAGGAATGGTAACCTTCTCTAAAGACCAGtgtatcATCATCAGTGGAGAAAGTGGGGCTGGAAAGACAGAGAGTGCCCACTTGATTGTTCAGCATCTTACCTTCTTAGGAAAGGCAAACAATCGAACACTCCGGGAAAAGATCCTGCAGGTTAATCCCCTGGTCGAGGCCTTTGGCAATGCCTGTACTGCCATCAATGACAACTCAAGCCGCTTTGGAAAATACCTGGAAATGAAATTCACGCCCACCGGTGCAGTGATGGGGGCCAAGATCTCCGAGTACCTGCTGGAGAAATCTCGAGTTATCAAACAGGCTGTTGGAGAGAAGAATTTccacatattttattacatctACGCCGGCCTTTATCATCAAAAGCAACTGAAGGAATATAGGCTGCAAGAGAAAACCCCTCCCAGGTACATCGACAGCGAACACGGTAAAGTGATGCAGGACATCGTCTCCAGTAAACTGTACAAGGAGCAGTTTGATGCCATTCAGCACTGTTTCCGAATCATTGGCTTTACTGAGGAGGAAGTAAATTCAGTGTATAGAATCCTTTCTGCCATCCTGAACACTGGAAATATTGAATTCGCTGCCATTACATCTCAACACCAGACTGATAAAAGTGAAGTGCCTAATTCTGAAGCCTTACAAAAtgCTGCTGCCCTCCTCAGTATTGGACCTGAGGAGCTCCAGGAGGCCCTGACCTCACACTGCGTGGTGACCAGAGGAGAGACCATCATCCGCACCAACACTGTGGACAAAGCCACCGACGTCCGTGACGCCATGTCCAAGGCCCTCTATGGGCGCCTCTTCAGCTGGATAGTGAACCGCATCAACTCCCTGCTGCAGCCGGACAAGAACATATGGTTAattgaATACCAAAGTGAGGGAATTGATGCCAAGCTGGTGGAATATGAAGACAATCGACCCATACTTGATATGTTCCTTCAGAAACCTATGGGACTGCTGTCTTTGCTGGATGAAGAAAGTCGCTTCCCTCAGGCAACTGACCAAACATTAGTAGATAAATTTGAGGACAATCTCCGTTACAAGTACTTCTGGAGACCAAAACGGGTTGAACTTTGTTTTGGAATTCAGCACTATGCTGGAAAGGTTTTGTACGACGCCAATGGCTTTTTGGAAAAGAACAAGGACACCCTTCCGGCGGACATTGTGGTGGTTTTAAGAACATCGGAGAACAAactgctgcagcagctgttttCTAGTCCCCTCACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160196 lncRNA upstream 208625 11671768 ~ 11742750 (+) True G127774
TU159869 lncRNA upstream 1506438 10442993 ~ 10444937 (+) True G127509
TU159589 lncRNA upstream 2573786 9363107 ~ 9377589 (+) True G127278
TU159484 lncRNA upstream 2868494 9081327 ~ 9082881 (+) True G127206
TU159408 lncRNA upstream 3311552 8638596 ~ 8639823 (+) True G127144
TU160371 lncRNA downstream 131444 12094141 ~ 12096863 (+) True G127924
TU160510 lncRNA downstream 398218 12360915 ~ 12362152 (+) False AMCG00001022
TU160511 lncRNA downstream 398218 12360915 ~ 12362152 (+) False AMCG00001022
TU160571 lncRNA downstream 577384 12540081 ~ 12540318 (+) True G128074
TU160600 lncRNA downstream 643342 12606039 ~ 12655172 (+) True G128101
AMCG00001005 mRNA upstream 18276 11925325 ~ 11933099 (+) True AMCG00001005
AMCG00001006 mRNA upstream 42063 11882644 ~ 11909312 (+) True AMCG00001006
AMCG00001004 mRNA upstream 79246 11848377 ~ 11872129 (+) True AMCG00001004
AMCG00000994 mRNA upstream 104215 11840490 ~ 11847160 (+) True AMCG00000994
AMCG00000995 mRNA upstream 111482 11826376 ~ 11839893 (+) True AMCG00000995
AMCG00001002 mRNA downstream 38311 12001008 ~ 12002172 (+) False AMCG00001002
AMCG00001009 mRNA downstream 52017 12014714 ~ 12017222 (+) True AMCG00001009
AMCG00001008 mRNA downstream 57108 12019805 ~ 12034616 (+) True AMCG00001008
AMCG00001003 mRNA downstream 77628 12040325 ~ 12062111 (+) True AMCG00001003
AMCG00001013 mRNA downstream 109806 12072503 ~ 12078897 (+) True AMCG00001013
TU159756 other upstream 1797188 10147857 ~ 10154187 (+) False AMCG00000949
TU159397 other upstream 3331180 8617199 ~ 8620195 (+) True G127134
TU157662 other upstream 10255128 1668845 ~ 1696247 (+) True AMCG00000729
TU157655 other upstream 10350736 1599696 ~ 1600639 (+) False AMCG00000723
TU157377 other upstream 11609604 339640 ~ 341771 (+) False G125561
TU160309 other downstream 36967 11999664 ~ 12011425 (+) True AMCG00001002
TU161370 other downstream 3207214 15169911 ~ 15174147 (+) True AMCG00001098
TU161504 other downstream 3446415 15409112 ~ 15420880 (+) False G128823
TU162207 other downstream 6060363 18023060 ~ 18044251 (+) True G129365
TU162326 other downstream 6583196 18545893 ~ 18547915 (+) True G129453

Expression Profile